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Publication Queue

Description: ORegAnno's work queue allows registered users to input relevant papers from scientific journals to a queue system for annotation. All that is required is a valid PubMED ID (PMID). Each added paper is set to PENDING. Any user can explicitly OPEN publications from the queue that are PENDING, to begin the annotation process. Once a paper has been completely annotated, the user will set the publication state to CLOSED. Otherwise, the user can revert the state back to PENDING. Comment fields are available for each change of state in the queue. A publication must be in the work queue before it can be annotated. VALIDATORS can set the state of a CLOSED paper back to PENDING, if they feel something was missed, otherwise they may correct the annotation directly.

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Items 1-10 of 58803 of 5881

Paper Queue
Entered as Expert entry by smontgom on: 2006-04-11

PMID:16086313

Buckland PR et al., Strong bias in the location of functional promoter polymorphisms. Hum Mutat Sep-2005


Score: 0.434427592839563

STATE HISTORY
2006-04-11: PENDING by smontgom

User comment: Added rSNPS, still need to add rHaplotypes

2006-04-11: OPEN by smontgom
2006-05-09: CLOSED by msleumer
2006-05-10: OPEN by msleumer
2006-11-29: PENDING by msleumer

User comment: Paper describes a human regulatory element tested in Drosophila cells

2006-11-30: OPEN by maximilianh3
2007-09-06: CLOSED by maximilianh3

User comment: uh...didn't see the last comment...

Closure comment: Failure - paper describes regulatory element but has been closed without annotation

2007-09-06: PENDING by maximilianh3
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by smontgom on: 2006-04-11

PMID:16303794

Gallo SM et al., REDfly: a Regulatory Element Database for Drosophila. Bioinformatics Feb-2006


STATE HISTORY
2006-04-11: PENDING by smontgom

User comment: Add REDfly resource from M. Halfon's lab

2006-06-21: OPEN by smontgom
2006-11-29: CLOSED by smontgom

User comment: Success - addition of new records

Closure comment: Success - addition of new records

2007-05-04: OPEN by bcb
2007-05-08: CLOSED by bcb

Closure comment: Failure - paper describes regulatory element but has been closed without annotation

STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by dvlieghe on: 2006-04-12

PMID:11430829


Score: 0.421834379943687

STATE HISTORY
2006-08-25: PENDING by dvlieghe
2006-08-25: OPEN by bchu
2006-11-30: PENDING by smontgom
2007-02-19: OPEN by bcb
2007-10-27: PENDING by obig
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by smontgom on: 2006-04-12

PMID:8662930

Piedrafita FJ et al., An Alu element in the myeloperoxidase promoter contains a composite SP1-thyroid hormone-retinoic acid response element. J Biol Chem Jun-1996


Score: 0.505312641031261

STATE HISTORY
2006-04-12: PENDING by smontgom

User comment: Paper identified by Obi Griffith containing a germline rSNP.

2006-04-12: OPEN by smontgom
2006-04-12: CLOSED by smontgom
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by bergman on: 2006-04-13

PMID:15013812


Score: 0.421480775091856

STATE HISTORY
2006-04-13: PENDING by bergman
2006-04-13: OPEN by bergman
2006-04-13: CLOSED by bergman
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by bergman on: 2006-04-13

PMID:11744367


Score: 0.571041941292701

STATE HISTORY
2006-04-13: PENDING by bergman
2006-04-13: OPEN by bergman
2006-04-13: CLOSED by bergman
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by bergman on: 2006-04-13

PMID:8643453


Score: 0.463222666678491

STATE HISTORY
2006-04-13: PENDING by bergman
2006-11-29: OPEN by jturatsi
2006-11-29: CLOSED by jturatsi

User comment: Success - addition of new records

Closure comment: Success - addition of new records

STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by smontgom on: 2006-04-13

PMID:16609362

Myers SN et al., Functional single nucleotide polymorphism haplotypes in the human equilibrative nucleoside transporter 1. Pharmacogenet Genomics May-2006


STATE HISTORY
2006-04-13: PENDING by smontgom

User comment: A rHaplotype that is composed of 2 contributing, individually tested rSNPs.

2006-08-03: OPEN by smontgom
2006-11-30: PENDING by smontgom
2007-09-13: OPEN by obig
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by smontgom on: 2006-04-13

PMID:16595692

Xu Y et al., NF-Y and CCAAT/enhancer-binding protein alpha synergistically activate the mouse amelogenin gene. J Biol Chem Jun-2006


STATE HISTORY
2006-04-13: PENDING by smontgom

User comment: TF (NF-Y) binds reverse CCAAT box in mouse

2006-04-13: OPEN by smontgom
2006-11-30: PENDING by smontgom
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
Entered as Expert entry by andy on: 2006-04-14

PMID:10433918


STATE HISTORY
2006-04-14: PENDING by andy
2006-04-14: OPEN by andy
2006-04-14: CLOSED by andy
2006-04-19: OPEN by andy
2006-04-19: CLOSED by andy
STATE CHANGE CONTROLS
ENTER COMMENT (Optional)
COMMENT:
CHANGE STATE:
SET STATE:
 

Questions or comments to oreganno@bcgsc.ca. (Archived here)