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Dataset Description

Dataset: FLYREG (OREGDS00000) Description: This dataset represents a systematic curation and genome annotation of 1,365 DNase I footprints for the fruitfly D. melanogaster reported in Bergman, Carlson and Celniker (2005) Bioinformatics 21:1747-1749. These data have been extracted from 201 primary references and provide a non-redundant set of high quality binding site information for 87 transcription factors and 101 target genes in one of the most important model systems. Unlike previous work, this dataset has been generated from a single experimental data type, represents all available developmental stages (including anterior-posterior, mesoderm and imaginal disk patterning), and is linked explicitly to finished genome sequence coordinates. This dataset should provide a useful resource for computational analyses of transcription factor binding site biology in the genus Drosophila. Dataset URL: http://www.flyreg.org/ Citation Information: Bergman, Carlson and Celniker (2005) Bioinformatics 21:1747-1749 Citation URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/bti173

Questions or comments to oreganno@bcgsc.ca. (Archived here)