16-Aug-2005 25-Aug-2006 obig deletion and substitution analyses 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap deletion and substitution analyses; EMSA; 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap ENSGALG00000009844 Actin ENSEMBL gallus_gallus_core_33_1h 280 POSITIVE OUTCOME 2552286 0 search_space EMPTY 0 false 0 sequence CTATAAA 0 false 0 sequence_with_flank gccgcgccgcgccttgcgCCATTCATGGccgcgctgcgccgccatggc 0 false Gallus gallus OREG0000112 TATA TATA USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 9-Aug-2006 obig deletion and substitution analyses 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap methylation interference footprinting 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 yuliyap ENSGALG00000009844 Actin ENSEMBL gallus_gallus_core_33_1h 281 POSITIVE OUTCOME 2552286 0 search_space EMPTY 0 false 0 sequence CCAAGAATGG 0 false 0 sequence_with_flank cagccgcgccgcgccttgcgcCCATTCATGGccgcgctgcgccgccatggc 0 false Gallus gallus OREG0000113 CArG2 CArG2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000068614 Actc1 ENSEMBL mus_musculus_core_33_34 282 POSITIVE OUTCOME 2123467 10-Aug-2006 1 obig 0 search_space EMPTY 0 false 0 sequence GCCCCCCACCCCTGCCCC 0 false 0 sequence_with_flank ggcaaggtggcagatcagggGCCCCCCACCCCTGCCCCcggctgctccaactgacccc 0 false Mus musculus OREG0000114 Sp1 Sp1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 10-Aug-2006 obig 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000068614 Actc1 ENSEMBL mus_musculus_core_33_34 283 POSITIVE OUTCOME 1570331 0 search_space EMPTY 0 false 0 sequence CAACTG 0 false 0 sequence_with_flank acccctgcccccggctgctcCAACTGAccccgtccatcagagagct 0 false Mus musculus OREG0000115 ENSMUSG00000009471 myoD ENSEMBL mus_musculus_core_33_34 TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation; cotransfection assay. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap EMSA 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap ENSMUSG00000068614 Actc1 ENSEMBL mus_musculus_core_33_34 284 POSITIVE OUTCOME 8164695 7-Oct-2005 1 obig 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank gctgcagcattctttggtttCAGCTGttagctaaagatgatttag 0 false Mus musculus OREG0000116 E4 E4 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 10-Aug-2006 obig DNA-binding studies; in vitro studies of synthetically ingeneered XMyoD. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSXETG00000012911 Actc1 ENSEMBL xenopus_tropicalis_core_33_1b 285 POSITIVE OUTCOME 1648530 0 search_space EMPTY 0 false 0 sequence CACCTG 0 false 0 sequence_with_flank aattgtgctgCACCTGtctgctccat 0 false Xenopus tropicalis OREG0000117 MyoD MyoD USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 gel shift assay; transfection; methylation interference assay 16-Aug-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap ENSGALG00000009844 Actin ENSEMBL gallus_gallus_core_33_1h 286 POSITIVE OUTCOME 8175685 30-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CATGTG 0 false 0 sequence_with_flank cgggaggctccctatttggcCATGTGgcggcgggaccgcgctgctc 0 false Gallus gallus OREG0000118 c-E2 c-E2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 25-Aug-2006 obig methylation interference footprinting; 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 yuliyap site-directed mutation. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSGALG00000009844 Actin ENSEMBL gallus_gallus_core_33_1h 287 POSITIVE OUTCOME 1850096 10-Aug-2006 1 obig 0 search_space EMPTY 0 false 0 sequence CCTTAGATGG 0 false 0 sequence_with_flank accgcgctgctccgcacctgCCTTAGATGGccggacagccgcgccgcgcc 0 false Gallus gallus OREG0000119 CArG3 CArG3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 25-Aug-2006 obig EMSA 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap methylation interference footprinting; 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 yuliyap mutation; contrasfection of myogenin and myf5(not MRF4). 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSGALG00000009844 Actin ENSEMBL gallus_gallus_core_33_1h 288 POSITIVE OUTCOME 8175685 0 search_space EMPTY 0 false 0 sequence CACCTG 0 false 0 sequence_with_flank ggcgggaccgcgctgctccgCACCTGccttagatggccggacagcc 0 false Gallus gallus OREG0000120 ENSGALG00000006216 c-MyoD1 ENSEMBL gallus_gallus_core_33_1h TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 10-Aug-2006 obig mutation, promoter transfection 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000159251 ACTC ENSEMBL homo_sapien_core_33_35e 289 POSITIVE OUTCOME 2123467 0 search_space EMPTY 0 false 0 sequence GCCCCCCACCCCTGCCCC 0 false 0 sequence_with_flank atgattaacacctgggctggGCCCCCCACCCCTGCCCCggggacgacttcagctggac 0 false Homo sapiens OREG0000121 Sp1 Sp1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 30-Jul-2007 OREG0003387 bcb EMSA; transfection with mutated h-MyoD in C2 cells 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap transfection with mutated h-MyoD in C2 cells 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000159251 ACTC ENSEMBL homo_sapien_core_33_35e 290 POSITIVE OUTCOME 2123467 0 search_space EMPTY 0 false 0 sequence CAACTG 0 false 0 sequence_with_flank acccctgcccccggctcctcCAACTGaccctgtccatcagcgttct 0 false Homo sapiens OREG0000122 ENSG00000129152 MyoD1 ENSEMBL homo_sapien_core_33_35e TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 EMSA 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap ENSMUSG00000035783 Acta2 ENSEMBL mus_musculus_core_33_34 291 POSITIVE OUTCOME 7744768 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CCTGTTTCGG 0 false 0 sequence_with_flank cataagcagctgagctgcctCCTGTTTCGGgagcagaacagaggaatgca 0 false Mus musculus OREG0000123 CArG-D CArG-D USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 mutation of binding site 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000035783 Acta2 ENSEMBL mus_musculus_core_33_34 292 POSITIVE OUTCOME 7744768 9-Aug-2006 1 obig 0 search_space EMPTY 0 false 0 sequence GGAATG 0 false 0 sequence_with_flank tgtttcgggagcagaacagaGGAATGcagtggaagagacccaggcc 0 false Mus musculus OREG0000124 PrM PrM USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 EMSA 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap mutation. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000035783 Acta2 ENSEMBL mus_musculus_core_33_34 293 POSITIVE OUTCOME 7744768 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GAAGAGACC 0 false 0 sequence_with_flank cagaacagaggaatgcagtgGAAGAGACCcaggcctctggccacccaga 0 false Mus musculus OREG0000125 CArG-C CArG-C USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 EMSA. 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap methylation interference; mutation. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000151729 ANT1 ENSEMBL homo_sapien_core_33_35e 294 POSITIVE OUTCOME 1400425 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GGCTCTAAAGAG 0 false 0 sequence_with_flank atttattctcgggagcgcacGGCTCTAAAGAGgcccatatccaggcagtgag 0 false Homo sapiens OREG0000126 OXBOX OXBOX USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003390 bcb mutation. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap EMSA; mutation. 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap ENSG00000151729 ANT1 ENSEMBL homo_sapien_core_33_35e 295 POSITIVE OUTCOME 1400425 0 search_space EMPTY 0 false 0 sequence GCCCATA 0 false 0 sequence_with_flank gagcgcacggctctaaagagGCCCATAtccaggcagtgagctctggt 0 false Homo sapiens OREG0000127 REOBX REOBX USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 mutation 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap footprinting 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap ENSG00000149925 ALDOA ENSEMBL homo_sapien_core_33_35e 296 POSITIVE OUTCOME 8413246 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GAATGTCAGGGGCTTCAGGTTTC 0 false 0 sequence_with_flank gccgggccccacgatagtgtGAATGTCAGGGGCTTCAGGTTTCcctaaatataggtccctgcc 0 false Homo sapiens OREG0000128 MEF3 MEF3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 transient transfection studies; 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000149925 ALDOA ENSEMBL homo_sapien_core_33_35e 297 POSITIVE OUTCOME 8417365 10-Aug-2006 1 obig 0 search_space EMPTY 0 false 0 sequence CTAAATATAG 0 false 0 sequence_with_flank gtcaggggcttcaggtttccCTAAATATAGgtccctgccagaggatccgt 0 false Homo sapiens OREG0000129 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 footprinting 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap mutation 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000023647 Aldoa ENSEMBL rattus_norvegicus_core_33_34b 298 POSITIVE OUTCOME 8413246 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GAATGTCAGGGGCCTCAGGTTTC 0 false 0 sequence_with_flank ttacccccctaggcagggatGAATGTCAGGGGCCTCAGGTTTCactaaatataggtccttgcc 0 false Rattus norvegicus OREG0000130 MEF3 MEF3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 gel retardation, gel shift assays; 16-Aug-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap deletion analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000023647 Aldoa ENSEMBL rattus_norvegicus_core_33_34b 299 POSITIVE OUTCOME 8413246 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CTAAATATAG 0 false 0 sequence_with_flank gtcaggggcctcaggtttcaCTAAATATAGgtccttgccgcgggattcgt 0 false Rattus norvegicus OREG0000131 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 footprinting; 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000149925 ALDOA ENSEMBL homo_sapien_core_33_35e 300 POSITIVE OUTCOME 8524331 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence TCCCTGCCAGAGGAT 0 false 0 sequence_with_flank caggtttccctaaatataggTCCCTGCCAGAGGATccgtggcgggaaaagggcag 0 false Homo sapiens OREG0000132 M2/NF1 M2/NF1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 obig mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000149925 ALDOA ENSEMBL homo_sapien_core_33_35e 301 POSITIVE OUTCOME 8524331 31-Jul-2007 1 obig 0 search_space EMPTY 0 false 0 sequence CACATG 0 false 0 sequence_with_flank tcattagagaagatcggggaCACATGtggggcgggcaggagctgcc 0 false Homo sapiens OREG0000133 E-box E-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000149925 ALDOA ENSEMBL homo_sapien_core_33_35e 302 POSITIVE OUTCOME 8524331 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GGCGGG 0 false 0 sequence_with_flank aagatcggggacacatgtggGGCGGGcaggagctgccttataacca 0 false Homo sapiens OREG0000134 ENSG00000185591 Sp1 ENSEMBL homo_sapien_core_33_35e TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003391 bcb deletion analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000023647 Aldoa ENSEMBL rattus_norvegicus_core_33_34b 303 POSITIVE OUTCOME 1959592 0 search_space EMPTY 0 false 0 sequence GAGTCA 0 false 0 sequence_with_flank cgccaatccacattccggctGAGTCAcgatgctcgcgcgcgcgcgc 0 false Rattus norvegicus OREG0000135 AP1 AP1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 mutation, deletion analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000023647 Aldoa ENSEMBL rattus_norvegicus_core_33_34b 304 POSITIVE OUTCOME 1959592 0 search_space EMPTY 0 false 0 sequence GGATGTGGC 0 false 0 sequence_with_flank ctagggcctggtgacctgagGGATGTGGCtcgagtcacgtcctagcggg 0 false Rattus norvegicus OREG0000136 PRRB PRRB USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 25-Aug-2006 obig deletion analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSGALG00000014600 CaD ENSEMBL gallus_gallus_core_33_1h 305 POSITIVE OUTCOME 7559534 0 search_space EMPTY 0 false 0 sequence CCAAAAAAGG 0 false 0 sequence_with_flank agaggccctgctaaggataaCCAAAAAAGGgcatgtagcaagacagtttt 0 false Gallus gallus OREG0000137 CArG-box CArG-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Record does represent a valid binding site in the Homo sapien AldoA gene. SRE is not found when searched in NCBI Gene. 7-Aug-2007 bcb 16-Aug-2005 7-Aug-2007 OREG0004681 bcb binding competion, DNase I and dimethylsulphate (DMS) protection and DMS interference assays. 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSG00000170345 ALDOA ENSEMBL homo_sapien_core_33_35e 306 POSITIVE OUTCOME 3582369 7-Aug-2007 -1 bcb 0 search_space EMPTY 0 false 0 sequence CCATATTAGG 0 false 0 sequence_with_flank tccccccttacacaggatgtCCATATTAGGacatctgcgtcagcaggttt 0 false Homo sapiens OREG0000138 SRE SRE USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 7-Aug-2007 OREG0004680 bcb EMSA 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap insertion, deletion analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000170345 ALDOA ENSEMBL homo_sapien_core_33_35e 307 POSITIVE OUTCOME 3561415 0 search_space EMPTY 0 false 0 sequence CATCTG 0 false 0 sequence_with_flank acaggatgtccatattaggaCATCTGcgtcagcaggtttccacggc 0 false Homo sapiens OREG0000139 MyoD MyoD USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000030399 MCK ENSEMBL mus_musculus_core_33_34 308 POSITIVE OUTCOME 8474439 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CCATGTAAGG 0 false 0 sequence_with_flank ccactacgggtctaggctgcCCATGTAAGGaggcaaggcctggggacacc 0 false Mus musculus OREG0000140 CArG3 CArG3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 11-Aug-2006 OREG0002343 bchu mutation analysis and transfection 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000030399 MCK ENSEMBL mus_musculus_core_33_34 309 POSITIVE OUTCOME 8474439 0 search_space EMPTY 0 false 0 sequence GGCCTGGGGA 0 false 0 sequence_with_flank aaggaggcaaggcctggggaGGCCTGGGGAcacccgagatgcctggttat 0 false Mus musculus OREG0000141 AP2 AP2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000030399 MCK ENSEMBL mus_musculus_core_33_34 310 POSITIVE OUTCOME 8206996 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GTTATAATTAACCCAG 0 false 0 sequence_with_flank ggggacacccgagatgcctgGTTATAATTAACCCAGacatgtggctgccccccccc 0 false Mus musculus OREG0000142 MEF2-Left MEF2-Left USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 deletion analysis; 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap DNase I footprinting and diethyl procarbonate interference. 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 yuliyap ENSMUSG00000030399 MCK ENSEMBL mus_musculus_core_33_34 311 POSITIVE OUTCOME 2601707 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence TCTAAAAATAAC 0 false 0 sequence_with_flank accatggaggagaagctcgcTCTAAAAATAACcctgtccctggtggatccag 0 false Mus musculus OREG0000143 MEF2-Right MEF2-Right USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003394 bcb EMSA. 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap ENSMUSG00000030399 MCK ENSEMBL mus_musculus_core_33_34 312 POSITIVE OUTCOME 8194764 0 search_space EMPTY 0 false 0 sequence CATGTG 0 false 0 sequence_with_flank ctggttataattaacccagaCATGTGgctgccccccccccccaaca 0 false Mus musculus OREG0000144 E-Left E-Left USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 EMSA. 16-Aug-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap ENSMUSG00000030399 MCK ENSEMBL mus_musculus_core_33_34 313 POSITIVE OUTCOME 8194764 0 search_space EMPTY 0 false 0 sequence CACCTG 0 false 0 sequence_with_flank tggctgccccccccccccaaCACCTGctgcctgagcctcaccccca 0 false Mus musculus OREG0000145 E-Right E-Right USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 EMSA; cross_competition experiments with alpha-actin GArG for SRF; Deletion analysis. 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSG00000198947 DMD ENSEMBL homo_sapiens_core_32_35e 325 POSITIVE OUTCOME 2403634 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CCTATTATGG 0 false 0 sequence_with_flank atgtagtgaccatggacagtCCTATTATGGgaaaccaacttgagagagaa 0 false Homo sapiens OREG0000147 CArG-box CArG-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 7-Aug-2007 OREG0004682 bcb Cotransfection experiments 16-Aug-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap ENSMUSG00000045103 Dmd ENSEMBL mus_musculus_core_32_34 326 POSITIVE OUTCOME 1316911 0 search_space EMPTY 0 false 0 sequence CACTTG 0 false 0 sequence_with_flank acttgagagaaaaggcgggtCACTTGcttgtgcgcaggtcctggaa 0 false Mus musculus OREG0000148 E-box E-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 21-Aug-2006 OREG0002264 bchu 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000106511 GAX ENSEMBL homo_sapiens_core_32_35e 327 POSITIVE OUTCOME 7623821 0 search_space EMPTY 0 false 0 sequence AGCCAGCCCCC 0 false 0 sequence_with_flank tggtcaactctgggctcctaAGCCAGCCCCCagctcacgtacactctatt 0 false Homo sapiens OREG0000149 HRF-1 right HRF-1 right USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 cotransfection; mutation analysis 16-Aug-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap Competition experiments 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSG00000106511 GAX ENSEMBL homo_sapiens_core_32_35e 328 POSITIVE OUTCOME 7623821 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence TATTTATAA 0 false 0 sequence_with_flank ccccagctcacgttacactcTATTTATAActtctcagagccatttcccc 0 false Homo sapiens OREG0000150 MEF2/TBP MEF2/TBP USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 21-Aug-2006 OREG0002265 bchu Competition experiments; mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSG00000106511 GAX ENSEMBL homo_sapiens_core_32_35e 329 POSITIVE OUTCOME 7623821 0 search_space EMPTY 0 false 0 sequence GCTGGCT 0 false 0 sequence_with_flank ttgcatgtggtcaactctggGCTGGCTaagccagcccccagctcacg 0 false Homo sapiens OREG0000151 HRF-1 Left HRF-1 Left USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 21-Aug-2006 OREG0002273 bchu Deletion anaysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000106511 GAX ENSEMBL homo_sapiens_core_32_35e 330 POSITIVE OUTCOME 7623821 0 search_space EMPTY 0 false 0 sequence GCCAGCCCCC 0 false 0 sequence_with_flank ggtcaactctgggctcctaaGCCAGCCCCCagctcacgtacactctatt 0 false Homo sapiens OREG0000152 SP1 SP1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000017226 GLUT4 ENSEMBL rattus_norvegicus_core_32_34b 331 POSITIVE OUTCOME 7545962 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CTAAAAATAG 0 false 0 sequence_with_flank ggcggagcctaacgtgggagCTAAAAATAGccattccgggttacttcggg 0 false Rattus norvegicus OREG0000153 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap ENSRNOG00000004878 MRF4 ENSEMBL rattus_norvegicus_core_32_34b 332 POSITIVE OUTCOME 7739551 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CAGTTGT 0 false 0 sequence_with_flank agcagggcagtgttaatcccCAGTTGTttttgaagttgcctggttag 0 false Rattus norvegicus OREG0000154 E2 E2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap ENSRNOG00000004878 MRF4 ENSEMBL rattus_norvegicus_core_32_34b 333 POSITIVE OUTCOME 7739551 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CATCTG 0 false 0 sequence_with_flank tcaccgcactaattaaatgcCATCTGggtggctcctctgggttttt 0 false Rattus norvegicus OREG0000155 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003395 bcb mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap Cotransfection experiments. 16-Aug-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap ENSRNOG00000004878 MRF4 ENSEMBL rattus_norvegicus_core_32_34b 334 POSITIVE OUTCOME 7739551 0 search_space EMPTY 0 false 0 sequence CTATATATAAA 0 false 0 sequence_with_flank ggattgagtttcagtagctaCTATATATAAAgctgggtcgacttatgtcac 0 false Rattus norvegicus OREG0000156 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003396 bcb in vitro competition experiments 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSMUSG00000009471 MyoD/Myf3 ENSEMBL mus_musculus_core_32_34 335 POSITIVE OUTCOME 8120060 0 search_space EMPTY 0 false 0 sequence CCTGGGGA 0 false 0 sequence_with_flank tccctggccccagtggctacCCTGGGGAccccaagctccgccctacta 0 false Mus musculus OREG0000157 AP2 AP2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003397 bcb in vitro competition experiments 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSMUSG00000009471 MyoD/Myf3 ENSEMBL mus_musculus_core_32_34 336 POSITIVE OUTCOME 8120060 0 search_space EMPTY 0 false 0 sequence CCGCCC 0 false 0 sequence_with_flank taccctggggaccccaagctCCGCCCtactacactcctattggctt 0 false Mus musculus OREG0000158 GC2 GC2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003398 bcb in vitro competition experiments 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSMUSG00000009471 MyoD/Myf3 ENSEMBL mus_musculus_core_32_34 337 POSITIVE OUTCOME 8120060 0 search_space EMPTY 0 false 0 sequence ATTGGCT 0 false 0 sequence_with_flank ctccgccctactacactcctATTGGCTtgaggcgcccccgcccccag 0 false Mus musculus OREG0000159 CCAAT-box CCAAT-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003399 bcb in vitro competition experiments 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap ENSMUSG00000009471 MyoD/Myf3 ENSEMBL mus_musculus_core_32_34 338 POSITIVE OUTCOME 8120060 0 search_space EMPTY 0 false 0 sequence CCGCCC 0 false 0 sequence_with_flank cctattggcttgaggcgcccCCGCCCccagcctccctttccagctc 0 false Mus musculus OREG0000315 Sp1 Sp1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 competition assay 16-Aug-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap 16-Aug-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap ENSMUSG00000009471 MyoD/Myf3 ENSEMBL mus_musculus_core_32_34 339 POSITIVE OUTCOME 8264638 0 search_space EMPTY 0 false 0 sequence ATAAATA 0 false 0 sequence_with_flank gggcttttaggctaccctggATAAATAgcccagggcgcctggcgcga 0 false Mus musculus OREG0000316 TATA-box TATA-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu 16-Aug-2005 26-Apr-2007 OREG0003036 bcb 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000026459 MYOG ENSEMBL mus_musculus_core_32_34 340 POSITIVE OUTCOME 839150 11-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence CACATG 0 false 0 sequence_with_flank aaaggagagggaaggggaat 0 false Mus musculus OREG0000317 E2 E2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 7-Aug-2007 OREG0004683 bcb 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000026459 MYOG ENSEMBL mus_musculus_core_32_34 341 POSITIVE OUTCOME 839150 0 search_space EMPTY 0 false 0 sequence CTATATTTAT 0 false 0 sequence_with_flank tcaggtttctgtggcgttggCTATATTTATctctgggttcatgccagcag 0 false Mus musculus OREG0000318 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 7-Aug-2007 OREG0004684 bcb 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000026459 MYOG ENSEMBL mus_musculus_core_32_34 342 POSITIVE OUTCOME 839150 0 search_space EMPTY 0 false 0 sequence CAGTTG 0 false 0 sequence_with_flank agggtttaaatggcacccagCAGTTGgtgtgaggggctgcgggagc 0 false Mus musculus OREG0000343 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000198125 MB ENSEMBL homo_sapiens_core_32_35e 343 POSITIVE OUTCOME 8330378 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CCACCCCACCCCC 0 false 0 sequence_with_flank ccttctttccacacgcacaaCCACCCCACCCCCtgtggcctgagctgtcctgc 0 false Homo sapiens OREG0000344 CCAC-box CCAC-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000198125 MB ENSEMBL homo_sapiens_core_32_35e 344 POSITIVE OUTCOME 8330378 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CACCTG 0 false 0 sequence_with_flank gtcctgcctcgccacaatggCACCTGccctaaaatagcttcccatg 0 false Homo sapiens OREG0000345 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0003401 bcb Mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000198125 MB ENSEMBL homo_sapiens_core_32_35e 345 POSITIVE OUTCOME 8330378 0 search_space EMPTY 0 false 0 sequence TAAAATAGC 0 false 0 sequence_with_flank cgccacaatggcacctgcccTAAAATAGCttcccatgtgagggctagag 0 false Homo sapiens OREG0000346 MEF-2 MEF-2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000198125 MB ENSEMBL homo_sapiens_core_32_35e 346 POSITIVE OUTCOME 8330378 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CATGTG 0 false 0 sequence_with_flank cctgccctaaaatagcttccCATGTGagggctagagaaaggaaaag 0 false Homo sapiens OREG0000347 E2 E2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000198125 MB ENSEMBL homo_sapiens_core_32_35e 347 POSITIVE OUTCOME 2156167 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence TATAAA 0 false 0 sequence_with_flank ttgtcaagcatcccagaaggTATAAAaacgcccttgggaccaggca 0 false Homo sapiens OREG0000348 TATA-box TATA-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 24-Aug-2006 bchu 16-Aug-2005 25-Apr-2007 OREG0003033 bcb Southwestern blot 16-Aug-2005 OREGEC00002 OREGES00000 OREGET00005 yuliyap transfection 16-Aug-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap DNase I analysis Competition assay 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap ENSG00000197616 MYH6 ENSEMBL homo_sapiens_core_32_35e 348 POSITIVE OUTCOME 8416951 24-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence CCTTTCAAG 0 false 0 sequence_with_flank agagaggctggggcagcagaCCTTTCAAGttgggcaaatcagggggccc 0 false Homo sapiens OREG0000349 GArC1 GArC1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deprecated. 10-Aug-2006 bchu EDIT: This record needs to be deleted. 10-Aug-2006 bchu 16-Aug-2005 17-Apr-2007 OREG0002990 bcb Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap ENSRNOG00000025757 Myh6 ENSEMBL rattus_norvegicus_core_32_34b 349 POSITIVE OUTCOME 8366095 10-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence TAAAAATAACT 0 false 0 sequence_with_flank gttcaactcagccttcagatTAAAAATAACTaaggtaagggccatgtgggtt 0 false Rattus norvegicus OREG0000350 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 10-Aug-2006 bchu 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap Mutation analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000025757 Myh6 ENSEMBL rattus_norvegicus_core_32_34b 350 POSITIVE OUTCOME 8366095 10-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence CAAAGGGCCGATGGGCAGATAGAGGAGA 0 false 0 sequence_with_flank ttgggcacattcctcctcccCAAAGGGCCGATGGGCAGATAGAGGAGAgacaggaccgtctcacacca 0 false Rattus norvegicus OREG0000351 PRE-D PRE-D USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 9-Aug-2006 OREG0002327 bchu 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000025757 Myh6 ENSEMBL rattus_norvegicus_core_32_34b 351 POSITIVE OUTCOME 8366095 0 search_space EMPTY 0 false 0 sequence GAGGAAAT 0 false 0 sequence_with_flank ctgcccatcggccctttgggGAGGAAATggaatgtgcccaaggactaa 0 false Rattus norvegicus OREG0000352 M-CAT M-CAT USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 10-Aug-2006 bchu 16-Aug-2005 25-Apr-2007 OREG0003034 bcb 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000025757 Myh6 ENSEMBL rattus_norvegicus_core_32_34b 352 POSITIVE OUTCOME 8366095 10-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence TAAAAAA 0 false 0 sequence_with_flank aggaatgtgcccaaggactaTAAAAAAggccctggagccagaggggc 0 false Rattus norvegicus OREG0000353 A/T-rich A/T-rich USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 10-Aug-2006 bchu 16-Aug-2005 25-Apr-2007 OREG0003035 bcb 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap Mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSRNOG00000025757 Myh6 ENSEMBL rattus_norvegicus_core_32_34b 353 POSITIVE OUTCOME 8366095 10-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence CCTTTCATGG 0 false 0 sequence_with_flank agaggggcgagggcagcagaCCTTTCATGGcaaacctcagggctgctgt 0 false Rattus norvegicus OREG0000354 CArG-box CArG-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap ENSG00000197616 MYH6 ENSEMBL homo_sapiens_core_32_35e 354 POSITIVE OUTCOME 2162840 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence TAAAAAAA 0 false 0 sequence_with_flank ggaggaatgtgcccaaggacTAAAAAAAggccgtggagccagagaggc 0 false Homo sapiens OREG0000355 A/T-rich A/T-rich USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap ENSRNOG00000025757 Myh6 ENSEMBL rattus_norvegicus_core_32_34b 355 POSITIVE OUTCOME 8537395 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CACGTGGAATG 0 false 0 sequence_with_flank ctccaaatttaggcagcaggCACGTGGAATGagctataaaggggctggagc 0 false Rattus norvegicus OREG0000356 E-box/M-CAT E-box/M-CAT USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0004658 bcb deletion analysis. 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap ENSG00000175084 DES ENSEMBL homo_sapiens_core_32_35e 356 POSITIVE OUTCOME 8387519 0 search_space EMPTY 0 false 0 sequence CTATAAATA 0 false 0 sequence_with_flank tcccagccatgcgttctcctCTATAAATAcccgctctggtatttggggt 0 false Homo sapiens OREG0000357 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0004659 bcb mutation analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00001 yuliyap ENSG00000175084 DES ENSEMBL homo_sapiens_core_32_35e 357 POSITIVE OUTCOME 8387519 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank gctctggtatttggggttggCAGCTGttgctgccagggagatggtt 0 false Homo sapiens OREG0000358 MyoD MyoD USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0004660 bcb deletion analysis 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSG00000175084 DES ENSEMBL homo_sapiens_core_32_35e 358 POSITIVE OUTCOME 8387519 0 search_space EMPTY 0 false 0 sequence GTGTGGGCG 0 false 0 sequence_with_flank aaaacacaaacccctggtgtGTGTGGGCGtgggtggtgtgagtaggggg 0 false Homo sapiens OREG0000359 K1 K1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 31-Jul-2007 OREG0004661 bcb mutation 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap footprinting 16-Aug-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap ENSG00000175084 DES ENSEMBL homo_sapiens_core_32_35e 359 POSITIVE OUTCOME 8387519 0 search_space EMPTY 0 false 0 sequence CGGGGGTG 0 false 0 sequence_with_flank ggagccacacaaagtctgtgCGGGGGTGggagcgcacatagcaattgg 0 false Homo sapiens OREG0000360 K3 K3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap ENSMUSG00000026208 Des ENSEMBL mus_musculus_core_32_34 360 POSITIVE OUTCOME 8382796 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank ggcaggacagagggatcctgCAGCTGtcaggggaggggcgccgggg 0 false Mus musculus OREG0000361 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 25-Aug-2006 OREG0002329 bchu 7-Oct-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap mutation stadies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7-Oct-2005 OREGEC00000 OREGES00000 OREGET00000 yuliyap 7431 VIM NCBI 363 AP-1 POSITIVE OUTCOME 7986748 0 search_space EMPTY 0 false 0 sequence tgagtca 0 false 0 sequence_with_flank atgaccaggtccatgccattTGAGTCAgtcacccggtgactaagcac 0 false Homo sapiens OREG0000368 AP-1 AP-1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap mutation analysis 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7431 VIM NCBI 364 AP-1 POSITIVE OUTCOME 7986748 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence tgactaa 0 false 0 sequence_with_flank gcgcggtgagtcaccgccggTGACTAAgcgaccccacccctctccct 0 false Homo sapiens OREG0000369 AP-1 AP-1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 9-Aug-2006 OREG0002320 bchu 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap 395761 TNNT3 NCBI 365 MEF2 POSITIVE OUTCOME 9089392 0 search_space EMPTY 0 false 0 sequence TAAATATAG 0 false 0 sequence_with_flank ttgctttgcctagtgtagcgTAAATATAGaaacacaaaccctgctgttt 0 false Gallus gallus OREG0000370 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap mutation studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 395761 TNNT3 NCBI 366 E1 POSITIVE OUTCOME 9089392 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CATCTG 0 false 0 sequence_with_flank tgtccctcccatctaagcatCATCTGtgtgatccctccagctgctc 0 false Gallus gallus OREG0000371 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 9-Aug-2006 OREG0002319 bchu 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap mutation analysis 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 395761 TNNT3 NCBI 367 E2 POSITIVE OUTCOME 9089392 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank gatgttgaagcagaagaatgCAGCTGctcctatacatggtatgact 0 false Gallus gallus OREG0000372 E2 A2M NCBI TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 19-Oct-2005 OREG0001751 yuliyap 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap mutation studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 395761 TNNT3 NCBI 368 M-CAT POSITIVE OUTCOME 9089392 19-Oct-2005 1 yuliyap 19-Oct-2005 -1 yuliyap 0 search_space EMPTY 0 false 0 sequence CACTCCT 0 false 0 sequence_with_flank ttttttccaccctttccctCACTCCTcaccccactcccttcctttc 0 false Gallus gallus OREG0000376 M-CAT M-CAT USER DEFINED TRANSCRIPTION FACTOR BINDING SITE MEF2 is necessary for full tissue-specific activity of rat cTnT in cardiomyocytes 7-Oct-2005 yuliyap 7-Oct-2005 deletion, insertion 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 24837 Tnnt2 NCBI 369 MEF2 POSITIVE OUTCOME 7982978 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GGTTTTAAATAG 0 false 0 sequence_with_flank gttccctgcatatctgctctGGTTTTAAATAGctttatctgagcagctggag 0 false Rattus norvegicus OREG0000378 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 19-Oct-2005 OREG0001752 yuliyap 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap gell retardation, affinityh purification of DNA-binding proteins 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 24837 Tnnt2 NCBI 370 CArG2 POSITIVE OUTCOME 7982978 0 search_space EMPTY 0 false 0 sequence CTTATATGG 0 false 0 sequence_with_flank cagctggaggaccacatgagCTTATATGGgcgtggggtacttgttcctt 0 false Rattus norvegicus OREG0000379 CArG2 CArG2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 19-Oct-2005 OREG0001753 yuliyap 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap gell retardation, affinityh purification of DNA-binding proteins 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 24837 Tnnt2 NCBI 371 CArG1 POSITIVE OUTCOME 7982978 0 search_space EMPTY 0 false 0 sequence CAAAATAGT 0 false 0 sequence_with_flank gccctgtgccgggcacctgtCAAAATAGTagccaacaccccccccattg 0 false Rattus norvegicus OREG0000382 CArG1 CArG1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 deletion, insertion 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7-Oct-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap 396433 TNNT2 NCBI 372 CAAT/CArG POSITIVE OUTCOME 1993702 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CCAAAATAG 0 false 0 sequence_with_flank gggggccggggccgctgctgCCAAAATAGcagctcacaagtgttgcatt 0 false Gallus gallus OREG0000383 CAAT/CArG CAAT/CArG USER DEFINED TRANSCRIPTION FACTOR BINDING SITE necessary for high levels muscle-specific activity of the cTnT promoter 7-Oct-2005 yuliyap 7-Oct-2005 deletion, insertion 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7-Oct-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap 396433 TNNT2 NCBI 373 MEF1 POSITIVE OUTCOME 1993702 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CTCACAAG 0 false 0 sequence_with_flank cgctgctgccaaaatagcagCTCACAAGtgttgcattcctctctgggc 0 false Gallus gallus OREG0000384 MEF1 MEF1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 9-Aug-2006 OREG0002321 bchu deletion studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap affinity purification of DNA-binding proteins 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 24837 Tnnt2 NCBI 375 TATA-box POSITIVE OUTCOME 7982978 0 search_space EMPTY 0 false 0 sequence TTAAA 0 false 0 sequence_with_flank acaagccccagcccacatgcTTAAAcagcccagcctctgcggcag 0 false Rattus norvegicus OREG0000385 TATA-box TATA-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 3' deletion to +70 did not affect cardiomyocyte-specific CAT expression. However, further 3' deletion to -55, removing the TATA-box, abolished CAT expression 7-Oct-2005 yuliyap 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap deletion studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7135 TNNI1 NCBI 377 MEF2 POSITIVE OUTCOME 8144655 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CTATAATA 0 false 0 sequence_with_flank ccaacccatgagatgacagaCTATAATAgccacaggattaacatagca 0 false Homo sapiens OREG0000387 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap deletion studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7135 TNNI1 NCBI 378 E-box POSITIVE OUTCOME 8144655 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CAGGTG 0 false 0 sequence_with_flank tcctaaaaatacccggtaaaCAGGTGcagcccctgtggctccagtc 0 false Homo sapiens OREG0000388 E-box E-box USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap mutation studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7134 TNNC1 NCBI 379 CEF1 POSITIVE OUTCOME 3480797 11-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence TGAGATCACT 0 false 0 sequence_with_flank cgtggggactcaggccagccTGAGATCACTgggaccagaggaggggctgg 0 false Homo sapiens OREG0000389 CEF1 CEF1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 19-Oct-2005 OREG0001754 yuliyap 7-Oct-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap in situ hybridization studies, indirect immunofluorescence 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7134 TNNC1 NCBI 380 CEF-2 POSITIVE OUTCOME 7935467 0 search_space EMPTY 0 false 0 sequence GGAGGGGCTGGAGGATAC 0 false 0 sequence_with_flank ctgagatcactgggaccagaGGAGGGGCTGGAGGATACtacacgcaggggtgggctgg 0 false Homo sapiens OREG0000390 CEF-2 CEF-2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 31-Jul-2007 OREG0004662 bcb methylation interference footprinting assay 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap mutation studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 7134 TNNC1 NCBI 381 SP-1 POSITIVE OUTCOME 8413270 0 search_space EMPTY 0 false 0 sequence GGCTGGGC 0 false 0 sequence_with_flank gggtgggctgggctgggctgGGCTGGGCcaggaatgcagcggggcagg 0 false Homo sapiens OREG0000391 SP-1 SP-1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 11-Aug-2006 OREG0002345 bchu 7-Oct-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap in situ hybridization studies, indirect immunofluorescence 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 21924 Tnnc1 NCBI 382 CEF-1 POSITIVE OUTCOME 7935467 0 search_space EMPTY 0 false 0 sequence TGAGATCACT 0 false 0 sequence_with_flank tacagggactttggccagccTGAGATCACTtacagggaccagggaggggg 0 false Mus musculus OREG0000392 CEF-1 CEF-1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap in situ hybridization studies, indirect immunofluorescence 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 21924 Tnnc1 NCBI 383 CEF-2 POSITIVE OUTCOME 7935467 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GGAGGGGGTGGAGGATAT 0 false 0 sequence_with_flank cctgagattacagggaccagGGAGGGGGTGGAGGATATtccaggcagtggtgggctgg 0 false Mus musculus OREG0000393 CEF-2 CEF-2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu 7-Oct-2005 23-Apr-2007 OREG0003012 bcb 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 7134 TNNC1 NCBI 384 SP-1 POSITIVE OUTCOME 3480797 11-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence ACGCTGCCCCCTGCA 0 false 0 sequence_with_flank gggcagataacactaccccaACGCTGCCCCCTGCAtaccaaagtccccagaacaa 0 false Homo sapiens OREG0000394 SP-1 SP-1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu 7-Oct-2005 23-Apr-2007 OREG0003013 bcb 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 7134 TNNC1 NCBI 385 MEF2 POSITIVE OUTCOME 3480797 11-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence CCTCGTTAAAAATA 0 false 0 sequence_with_flank aggtttaactttgtccccctCCTCGTTAAAAATAgctcagtggccaccctggtc 0 false Homo sapiens OREG0000395 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 7134 TNNC1 NCBI 386 MEF3 POSITIVE OUTCOME 3480797 11-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence ACCCTGGTCAGGTTACCGTGGGTGG 0 false 0 sequence_with_flank ttaaaaatagcccagtggccACCCTGGTCAGGTTACCGTGGGTGGcttgcctgcctccacactgg 0 false Homo sapiens OREG0000396 MEF3 MEF3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu On the Feb 2006 mouse assembly (mm8) it appears that the first G of the binding site is a deletion. (The extended sequence maps to chr14:30038338-30038391.) 31-Oct-2006 alistairR Sequence annotated is for the hamster genome, however a complete build is not available of this organism therefore it can not be successfully mapped at this time. 23-Apr-2007 bcb 7-Oct-2005 23-Apr-2007 OREG0003011 bcb 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 21924 Tnnc1 NCBI 387 SP1 POSITIVE OUTCOME 3480797 11-Aug-2006 -1 bchu 11-Aug-2006 -1 bchu 23-Apr-2007 -1 bcb 0 search_space EMPTY 0 false 0 sequence GCCCCACCCCCTGCA 0 false 0 sequence_with_flank caggggggcagataacactaGCCCCACCCCCTGCAtaccaaagtccccagaacaa 0 false Mus musculus OREG0000397 SP1 SP1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 21924 Tnnc1 NCBI 388 MEF2 POSITIVE OUTCOME 3480797 11-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence CCCCTTTAAAAATA 0 false 0 sequence_with_flank tcaccaggtttaactttgtcCCCCTTTAAAAATAgctcagtggccaccctggtc 0 false Mus musculus OREG0000398 MEF2 MEF2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 11-Aug-2006 bchu 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 21924 Tnnc1 NCBI 389 MEF3 POSITIVE OUTCOME 3480797 11-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence ACCCTGGTCAGGTTACAGTGGGTGG 0 false 0 sequence_with_flank ttaaaaatagctcagtggccACCCTGGTCAGGTTACAGTGGGTGGctttgctcgcccccacattc 0 false Mus musculus OREG0000399 MEF3 MEF3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE An upstream E-box (E4), located at -525, binds MyoD and myogenin and transactivates the MLC1A promoter 7-Oct-2005 yuliyap 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap 17896 Myl4 NCBI 390 E4 POSITIVE OUTCOME 7623850 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank aatagcagagccagctccacCAGCTGttgcttcagggctccatgcc 0 false Mus musculus OREG0000400 E4 E4 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE The E-box (E1) located at -81, binds MyoD and myogenin and is critical for transactivation of the MLC1A promoter. 7-Oct-2005 yuliyap 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap mutation studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 17896 Myl4 NCBI 391 E1 POSITIVE OUTCOME 7623850 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CAGTTG 0 false 0 sequence_with_flank cttccttttatagtcagcagCAGTTGctgctgccctccccagcccc 0 false Mus musculus OREG0000401 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE The CArG-box, located at -80 in the MLC1A promoter (7 bp upstream from E4) binds SRF and a myotube-enriched b complex 7-Oct-2005 yuliyap 7-Oct-2005 7-Oct-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap 7-Oct-2005 OREGEC00001 OREGES00004 OREGET00002 yuliyap mutation studies 7-Oct-2005 OREGEC00001 OREGES00000 OREGET00000 yuliyap 17896 Myl4 NCBI 392 CArG POSITIVE OUTCOME 7623850 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CCTTTTATAG 0 false 0 sequence_with_flank cccggctggtgtctcttCCTTTTATAGtcagcagcagttgctgctgc 0 false Mus musculus OREG0000402 CArG CArG USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 19-Oct-2005 19-Oct-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap 395761 TNNT3 NCBI 1984 M-CAT POSITIVE OUTCOME 9089392 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CACTCCT 0 false 0 sequence_with_flank ttttttccaccctttccctCACTCCTcaccccactcccttcctttc 0 false Gallus gallus OREG0001751 M-CAT M-CAT USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 19-Oct-2005 11-Aug-2006 OREG0002341 bchu 19-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 19-Oct-2005 OREGEC00001 OREGES00001 OREGET00001 yuliyap 19-Oct-2005 OREGEC00002 OREGES00023 OREGET00004 yuliyap 19-Oct-2005 OREGEC00002 OREGES00024 OREGET00005 yuliyap 24837 Tnnt2 NCBI 1985 CArG2 POSITIVE OUTCOME 7982978 0 search_space EMPTY 0 false 0 sequence CTTATATGG 0 false 0 sequence_with_flank cagctggaggaccacatgagCTTATATGGgcgtggggtacttgttcctt 0 false Rattus norvegicus OREG0001752 CArG2 CArG2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 19-Oct-2005 19-Oct-2005 OREGEC00001 OREGES00015 OREGET00003 yuliyap 19-Oct-2005 OREGEC00001 OREGES00013 OREGET00001 yuliyap 19-Oct-2005 OREGEC00002 OREGES00024 OREGET00005 yuliyap 19-Oct-2005 OREGEC00002 OREGES00023 OREGET00004 yuliyap 24837 Tnnt2 NCBI 1986 CArG1 POSITIVE OUTCOME 7982978 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence CAAAATAGT 0 false 0 sequence_with_flank gccctgtgccgggcacctgtCAAAATAGTagccaacaccccccccattg 0 false Rattus norvegicus OREG0001753 CArG1 CArG1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 19-Oct-2005 19-Oct-2005 OREGEC00001 OREGES00003 OREGET00001 yuliyap 19-Oct-2005 OREGEC00002 OREGES00023 OREGET00004 yuliyap 7134 TNNC1 NCBI 1987 CEF-2 POSITIVE OUTCOME 7935467 31-Jul-2007 1 bcb 0 search_space EMPTY 0 false 0 sequence GGAGGGGCTGGAGGATAC 0 false 0 sequence_with_flank ctgagatcactgggaccagaGGAGGGGCTGGAGGATACtacacgcaggggtgggctgg 0 false Homo sapiens OREG0001754 CEF-2 CEF-2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Homo sapiens 9606 Xenopus tropicalis 8364 Gallus gallus 9031 Rattus norvegicus 10116 Mus musculus 10090 yuliyap 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000027107 Chrna1 ENSEMBL mus_musculus_core_32_34 244 POSITIVE OUTCOME 2721497 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank ctttgaggctgtgggcagctCAGCTGtcatgcgggcacacaggtga 0 false Mus musculus OREG0000319 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000027107 Chrna1 ENSEMBL mus_musculus_core_32_34 245 POSITIVE OUTCOME 2342565 0 search_space EMPTY 0 false 0 sequence CAGGTG 0 false 0 sequence_with_flank tcagctgtcatgcgggcacaCAGGTGatgtaagacaatagctgtgg 0 false Mus musculus OREG0000320 E2 E2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 21-Aug-2006 OREG0002246 bchu Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000027107 Chrna1 ENSEMBL mus_musculus_core_32_34 246 POSITIVE OUTCOME 1658001 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank taagacaatagctgtggagtCAGCTGgcttccaaggccagcgggcc 0 false Mus musculus OREG0000321 E3 E3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000041189 chrnb1 ENSEMBL mus_musculus_core_32_34 247 POSITIVE OUTCOME 1317551 0 search_space EMPTY 0 false 0 sequence CAGGTG 0 false 0 sequence_with_flank ggcgtctggtcccccgacaaCAGGTGcacattcctgggcgcctcgt 0 false Mus musculus OREG0000322 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSRNOG00000030986 chrnb1 ENSEMBL rattus_norvegicus_core_32_34b 248 POSITIVE OUTCOME 7916688 0 search_space EMPTY 0 false 0 sequence CAGGTG 0 false 0 sequence_with_flank ggcagctggtcccccgacaaCAGGTGcacattcctgggcgcctcgt 0 false Rattus norvegicus OREG0000323 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSRNOG00000030986 chrnb1 ENSEMBL rattus_norvegicus_core_32_34b 249 POSITIVE OUTCOME 7916688 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank gggtggggcgggtgggctggCAGCTGgtcccccgacaacaggtgca 0 false Rattus norvegicus OREG0000324 E2 E2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSRNOG00000030986 chrnb1 ENSEMBL rattus_norvegicus_core_32_34b 250 POSITIVE OUTCOME 7916688 0 search_space EMPTY 0 false 0 sequence CATTCC 0 false 0 sequence_with_flank GtcccccgacaacaggtgcaCATTCCtgggcgcctcgtcacttccc 0 false Rattus norvegicus OREG0000325 M-CAT M-CAT USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000026253 Chrng ENSEMBL mus_musculus_core_32_34 251 POSITIVE OUTCOME 1657903 0 search_space EMPTY 0 false 0 sequence CATCTG 0 false 0 sequence_with_flank accactgctgtccccacaccCATCTGtccttggccatttgctgagt 0 false Mus musculus OREG0000326 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000026253 Chrng ENSEMBL mus_musculus_core_32_34 252 POSITIVE OUTCOME 1657903 0 search_space EMPTY 0 false 0 sequence CATTTG 0 false 0 sequence_with_flank cacacccatctgtccttggcCATTTGctgagtctcctagctggaaa 0 false Mus musculus OREG0000327 E2 E2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000026253 Chrng ENSEMBL mus_musculus_core_32_34 253 POSITIVE OUTCOME 1657903 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank cattgtacatatcctgggaaCAGCTGacaatgcagtggtcagacag 0 false Mus musculus OREG0000328 E3 E3 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000026253 Chrng ENSEMBL mus_musculus_core_32_34 254 POSITIVE OUTCOME 1657903 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank CtgacaatgcagtggtcagaCAGCTGgtggggccagctagagctgg 0 false Mus musculus OREG0000329 E4 E4 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Electrophoretic mobility shift assay (EMSA); Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000026251 Chrnd ENSEMBL mus_musculus_core_32_34 255 POSITIVE OUTCOME 2797207 0 search_space EMPTY 0 false 0 sequence CACCTG 0 false 0 sequence_with_flank ccaaacccctaaaccaccagCACCTGtccccttgcttgcctcattc 0 false Mus musculus OREG0000330 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000026251 Chrnd ENSEMBL mus_musculus_core_32_34 256 POSITIVE OUTCOME 2797207 0 search_space EMPTY 0 false 0 sequence TGCCTGG 0 false 0 sequence_with_flank CaacaatctgtgacaatcccTGCCTGGgatcttttcgttctgccctt 0 false Mus musculus OREG0000331 UNKNOWN UNKNOWN USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000026251 Chrnd ENSEMBL mus_musculus_core_32_34 257 POSITIVE OUTCOME 2797207 0 search_space EMPTY 0 false 0 sequence TGCCCTTG 0 false 0 sequence_with_flank TgcctgggatcttttcgttcTGCCCTTGgctcctgccctaactggcaa 0 false Mus musculus OREG0000332 UNKNOWN UNKNOWN USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000026251 Chrnd ENSEMBL mus_musculus_core_32_34 258 POSITIVE OUTCOME 2797207 0 search_space EMPTY 0 false 0 sequence TGCCCTAA 0 false 0 sequence_with_flank TtcgttctgcccttggctccTGCCCTAActggcaaaccccaccccctc 0 false Mus musculus OREG0000333 UNKNOWN UNKNOWN USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000026251 Chrnd ENSEMBL mus_musculus_core_32_34 259 POSITIVE OUTCOME 2797207 0 search_space EMPTY 0 false 0 sequence TGGCAAAC 0 false 0 sequence_with_flank CccttggctcctgccctaacTGGCAAACcccaccccctcatcaccagc 0 false Mus musculus OREG0000334 UNKNOWN UNKNOWN USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Transient transfection and luciferase reporter assay; Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky ENSMUSG00000014609 Chrne ENSEMBL mus_musculus_core_32_34 260 POSITIVE OUTCOME 8464921 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank GcaagggacacaggatggggCAGCTGcctcccccacccccacagca 0 false Mus musculus OREG0000335 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Transient transfection and luciferase reporter assay; Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky ENSRNOG00000004795 Chrne ENSEMBL rattus_norvegicus_core_32_34b 261 POSITIVE OUTCOME 8464921 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank gcaagggacacaggatgaggCAGCTGcctcttccacccccacagca 0 false Rattus norvegicus OREG0000336 E1 E1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Transient transfection and luciferase reporter assay; 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000023328 Ache ENSEMBL mus_musculus_core_32_34 262 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGGCGG 0 false 0 sequence_with_flank gcagcccgggggagcggggaGGGGCGGgggcggagacagtgggcggg 0 false Mus musculus OREG0000337 ENSMUSG00000001280 Sp1 ENSEMBL mus_musculus_core_32_34 TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 22-Aug-2006 OREG0002278 bchu Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky Transient transfection and luciferase reporter assay; 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky ENSMUSG00000023328 Ache ENSEMBL mus_musculus_core_32_34 263 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGCGG 0 false 0 sequence_with_flank gggggagcggggaggggcggGGGCGGagacagtgggcgggggcggg 0 false Mus musculus OREG0000338 ENSMUSG00000001280 Sp1 ENSEMBL mus_musculus_core_32_34 TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 22-Aug-2006 OREG0002304 bchu Transient transfection and luciferase reporter assay; 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000023328 Ache ENSEMBL mus_musculus_core_32_34 264 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGCGG 0 false 0 sequence_with_flank ggggcgggggcggagacagtGGGCGGgggcgggcgccgtgcggccc 0 false Mus musculus OREG0000339 ENSMUSG00000001280 Sp1 ENSEMBL mus_musculus_core_32_34 TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky Transient transfection and luciferase reporter assay 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky Gel mobility shift assays 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000023328 Ache ENSEMBL mus_musculus_core_32_34 265 POSITIVE OUTCOME 7559515 0 search_space EMPTY 0 false 0 sequence GCCGGAGG 0 false 0 sequence_with_flank cggaggggtgtgtgcgggggGCCGGAGGcggctgtcactgtcggctca 0 false Mus musculus OREG0000340 Ap2 Ap2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 22-Aug-2006 OREG0002283 bchu Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky Insertion analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000023328 Ache ENSEMBL mus_musculus_core_32_34 266 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GCGGGGG 0 false 0 sequence_with_flank gcccgggggagcggggagggGCGGGGGcggagacagtgggcgggggc 0 false Mus musculus OREG0000341 ENSMUSG00000038418 Egr1 ENSEMBL mus_musculus_core_32_34 TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 22-Aug-2006 OREG0002293 bchu Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky Electrophoretic mobility shift assay (EMSA) 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSMUSG00000023328 Ache ENSEMBL mus_musculus_core_32_34 267 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGCGGGCG 0 false 0 sequence_with_flank ggggcggagacagtgggcggGGGCGGGCGccgtgcctgtgaggcccgga 0 false Mus musculus OREG0000342 ENSMUSG00000038418 Egr1 ENSEMBL mus_musculus_core_32_34 TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000087085 Ache ENSEMBL homo_sapiens_core_32_35a 268 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGGCGG 0 false 0 sequence_with_flank GccacccgggagagcggggaGGGGCGGgggcggagacagtgggcggg 0 false Homo sapiens OREG0000077 ENSG00000185591 Sp1 ENSEMBL homo_sapiens_core_32_35a TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000087085 Ache ENSEMBL homo_sapiens_core_32_35a 269 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGCGG 0 false 0 sequence_with_flank GggagagcggggaggggcggGGGCGGagacagtgggcgggggcggg 0 false Homo sapiens OREG0000078 ENSG00000185591 Sp1 ENSEMBL homo_sapiens_core_32_35a TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Luciferase reporter assay; Deletion analysis 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky ENSG00000087085 Ache ENSEMBL homo_sapiens_core_32_35a 270 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGCGG 0 false 0 sequence_with_flank GgggcgggggcggagacagtGGGCGGgggcgggcgggggcgctgtg 0 false Homo sapiens OREG0000079 ENSG00000185591 Sp1 ENSEMBL homo_sapiens_core_32_35a TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000087085 Ache ENSEMBL homo_sapiens_core_32_35a 271 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GCGGGGG 0 false 0 sequence_with_flank AcccgggagagcggggagggGCGGGGGcggagacagtgggcgggggc 0 false Homo sapiens OREG0000080 ENSG00000120738 Egr1 ENSEMBL homo_sapiens_core_32_35a TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000087085 Ache ENSEMBL homo_sapiens_core_32_35a 272 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GGGCGGGCG 0 false 0 sequence_with_flank GgggcggagacagtgggcggGGGCGGGCGggggcgctgtgaggcccgga 0 false Homo sapiens OREG0000081 ENSG00000120738 Egr1 ENSEMBL homo_sapiens_core_32_35a TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 21-Aug-2006 OREG0002262 bchu Transient transfection and luciferase reporter assay 16-Aug-2005 OREGEC00000 OREGES00004 OREGET00002 mbilenky Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky EMSA 16-Aug-2005 OREGEC00000 OREGES00013 OREGET00001 mbilenky ENSG00000087085 Ache ENSEMBL homo_sapiens_core_32_35a 273 POSITIVE OUTCOME 7829523 0 search_space EMPTY 0 false 0 sequence GCCGGAGG 0 false 0 sequence_with_flank cggagggggtgtgtgcggggGCCGGAGGcggcggctgtcagagtcggc 0 false Homo sapiens OREG0000082 Ap2 Ap2 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSMUSG00000068614 Actc1 ENSEMBL mus_musculus_core_32_34 274 POSITIVE OUTCOME 8164695 0 search_space EMPTY 0 false 0 sequence CAGCTG 0 false 0 sequence_with_flank GctgcagcattctttggtttCAGCTGttagctaaagatgatttaga 0 false Mus musculus OREG0000083 E4 E4 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000143632 ACTA1 ENSEMBL homo_sapiens_core_32_35a 275 POSITIVE OUTCOME 1922033 0 search_space EMPTY 0 false 0 sequence CCATATACGG 0 false 0 sequence_with_flank AaacccgctagggagacactCCATATACGGcccggcccgcgttacctggg 0 false Homo sapiens OREG0000084 SRE SRE USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 Mutation analysis 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000143632 ACTA1 ENSEMBL homo_sapiens_core_32_35a 276 POSITIVE OUTCOME 1922033 0 search_space EMPTY 0 false 0 sequence TCCTTCTTTG 0 false 0 sequence_with_flank CtgggaccgggccaacccgcTCCTTCTTTGgtcaacgcaggggacccggg 0 false Homo sapiens OREG0000085 SRE SRE USER DEFINED TRANSCRIPTION FACTOR BINDING SITE 16-Aug-2005 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000143632 ACTA1 ENSEMBL homo_sapiens_core_32_35a 277 POSITIVE OUTCOME 1922033 0 search_space EMPTY 0 false 0 sequence CCAAATATGG 0 false 0 sequence_with_flank GgggctctagtgcccaacacCCAAATATGGctcgagaagggcagcgacat 0 false Homo sapiens OREG0000086 SRE SRE USER DEFINED TRANSCRIPTION FACTOR BINDING SITE This record needs to be deleted. 21-Aug-2006 bchu 16-Aug-2005 20-Apr-2007 OREG0002931 bcb 16-Aug-2005 OREGEC00000 OREGES00000 OREGET00000 mbilenky ENSG00000143632 ACTA1 ENSEMBL homo_sapiens_core_32_35a 278 POSITIVE OUTCOME 1922033 21-Aug-2006 -1 bchu 0 search_space EMPTY 0 false 0 sequence TATAAA 0 false 0 sequence_with_flank AgggaatcgcccgcgggctaTATAAAacctgagcagagggacaagc 0 false Homo sapiens OREG0000098 TATA TATA USER DEFINED TRANSCRIPTION FACTOR BINDING SITE p3143 "...ability to mediate bicoid transcription, confirming that DNA binding is a primary determinant of sry d function in vivo." 29-Nov-2006 mbilenky 29-Nov-2006 29-Nov-2006 OREGEC00001 OREGES00015 OREGET00003 mbilenky CG1034 bcd ENSEMBL drosophila_melanogaster_core_41_43 4066 bicoid POSITIVE OUTCOME 9154812 0 search_space EMPTY 0 false 0 sequence TCCCATCTCTA 0 false 0 sequence_with_flank gccgccaattgTCCCATCTCTAcatctcttcgctcatccctaaataacggcactctgcag 0 false Drosophila melanogaster OREG0002342 CG17958 Sry-delta ENSEMBL drosophila_melanogaster_core_41_43 TRANSCRIPTION FACTOR BINDING SITE p3144 "While binding of sry d to a single site results in transcriptional activation of a proximal promoter, the presence of multiple sites strongly synergizes both binding ef- ficiency and transactivation. This cooperative binding on multiple sites explains why inactivation of only one of the two sry d binding sites in the bicoid promoter is sufficient to impair bicoid transcription." 29-Nov-2006 mbilenky 29-Nov-2006 29-Nov-2006 OREGEC00001 OREGES00015 OREGET00003 mbilenky CG1034 bcd ENSEMBL drosophila_melanogaster_core_41_43 4074 bicoid POSITIVE OUTCOME 9154812 0 search_space EMPTY 0 false 0 sequence CGCTCATCCCTAA 0 false 0 sequence_with_flank gccgccaattgtcccatctctacatctcttCGCTCATCCCTAAataacggcactctgcag 0 false Drosophila melanogaster OREG0002393 CG17958 Sry-delta ENSEMBL drosophila_melanogaster_core_41_43 TRANSCRIPTION FACTOR BINDING SITE 29-Nov-2006 EV:0200107 29-Nov-2006 OREGEC00001 OREGES00002 OREGET00001 mbilenky Supershift EMSAs performed in the presence of HeLa nuclear extract demonstrated similar results (Figure 4B). This increase in promoter activity is specific to the THP-1 cell line as promoter activity is observed to be minimal in the HeLa cell line, which is of epithelial origin. 29-Nov-2006 OREGEC00001 OREGES00002 OREGET00001 mbilenky We report a deletion analysis of the gene promoter and we demonstrate that the first 1.3 kb of the LTC4 synthase promoter mediates a 21.1-fold increase in transcriptional activity in the monocyte-like cell line THP-1. 29-Nov-2006 OREGEC00001 OREGES00000 OREGET00000 mbilenky Drosophila SL-2 cell line Our findings in the Sp-deficient Drosophila SL-2 cell line indicate that both Sp1 and Sp3 are positive regulators of LTC4 synthase gene transcription, suggesting a cooperative role of these factors. 29-Nov-2006 OREGEC00001 OREGES00004 OREGET00002 mbilenky 4056 LTC4S NCBI 4117 POSITIVE OUTCOME 10919991 0 search_space EMPTY 0 false 0 sequence GGGGCGG 0 false 0 sequence_with_flank ctccctgctggcttggcctggctccctggctctgtgtggtatggtcacacccccgtgcaccccctccactgagatGGGGCGGggagagcaccgaggctgc 0 false Homo sapiens OREG0002453 6667 SP1 NCBI TRANSCRIPTION FACTOR BINDING SITE 30-Nov-2006 17-Apr-2007 OREG0002989 bcb Cell line: COS cells "we performed a gel shift experiment in which the different combinations of C/EBPs were expressed in COS cells and were supershifted by different C/EBP antibodies" 30-Nov-2006 OREGEC00001 OREGES00002 OREGET00001 mbilenky ENSMUSG00000000440 Pparg ENSEMBL mus_musculus_core_41_36b 4177 POSITIVE OUTCOME 10862621 0 search_space EMPTY 0 false 0 sequence GCAAT 0 false 0 sequence_with_flank tggtgtgtattttactGCAATtttaaaaagcaatcaatattgaacaatcta 0 false Mus musculus OREG0002511 ENSMUSG00000034957 Cebpa ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE Binding of C/EBP alpha induces transcription 30-Nov-2006 mbilenky 30-Nov-2006 17-Apr-2007 OREG0002982 bcb Cells: COS mouse Binding analysis by a gel shift assay using C/EBP binding sites on the PPARgamma 2 promoter as a probe showed that C/EBPalpha and C/EBPdelta , but not C/EBPbeta , were able to bind to the C/EBP binding sites 30-Nov-2006 OREGEC00001 OREGES00002 OREGET00001 mbilenky ENSMUSG00000000440 Pparg ENSEMBL mus_musculus_core_41_36b 4180 POSITIVE OUTCOME 10862621 0 search_space EMPTY 0 false 0 sequence GCAAT 0 false 0 sequence_with_flank tggtgtgtattttactgcaattttaaaaaGCAATcaatattgaacaatcta 0 false Mus musculus OREG0002514 ENSMUSG00000034957 Cebpa ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE C/EBP delta induces transcription 30-Nov-2006 mbilenky 30-Nov-2006 17-Apr-2007 OREG0002983 bcb COS mouse cells 30-Nov-2006 OREGEC00001 OREGES00002 OREGET00001 mbilenky ENSMUSG00000000440 Pparg ENSEMBL mus_musculus_core_41_36b 4184 POSITIVE OUTCOME 10862621 0 search_space EMPTY 0 false 0 sequence GCAAT 0 false 0 sequence_with_flank tggtgtgtattttactGCAATtttaaaaagcaatcaatattgaacaatcta 0 false Mus musculus OREG0002519 ENSMUSG00000071637 NM_007679.2 ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE C/EBP delta induces transcription 30-Nov-2006 mbilenky 30-Nov-2006 17-Apr-2007 OREG0002984 bcb COS mouse cells 30-Nov-2006 OREGEC00001 OREGES00002 OREGET00001 mbilenky ENSMUSG00000000440 Pparg ENSEMBL mus_musculus_core_41_36b 4188 POSITIVE OUTCOME 10862621 0 search_space EMPTY 0 false 0 sequence GCAAT 0 false 0 sequence_with_flank tggtgtgtattttactgcaattttaaaaaGCAATcaatattgaacaatcta 0 false Mus musculus OREG0002524 ENSMUSG00000056216 Cebpg ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE presence of C/EBP-betta represses transcription induces by other C/EBPs 30-Nov-2006 mbilenky 30-Nov-2006 17-Apr-2007 OREG0002985 bcb COS mouse cells 30-Nov-2006 OREGEC00001 OREGES00002 OREGET00001 mbilenky ENSMUSG00000000440 Pparg ENSEMBL mus_musculus_core_41_36b 4192 POSITIVE OUTCOME 10862621 0 search_space EMPTY 0 false 0 sequence GCAAT 0 false 0 sequence_with_flank tggtgtgtattttactGCAATtttaaaaagcaatcaatattgaacaatcta 0 false Mus musculus OREG0002530 ENSMUSG00000056501 Cebpb ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE presence of C/EBP-betta represses transcription induces by other C/EBPs 30-Nov-2006 mbilenky 30-Nov-2006 17-Apr-2007 OREG0002987 bcb COS mouse cells 30-Nov-2006 OREGEC00000 OREGES00002 OREGET00001 mbilenky ENSMUSG00000000440 Pparg ENSEMBL mus_musculus_core_41_36b 4196 POSITIVE OUTCOME 10862621 0 search_space EMPTY 0 false 0 sequence GCAAT 0 false 0 sequence_with_flank tggtgtgtattttactgcaattttaaaaaGCAATcaatattgaacaatcta 0 false Mus musculus OREG0002542 ENSMUSG00000056501 Cebpb ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE 30-Nov-2006 30-Nov-2006 OREGEC00002 OREGES00045 OREGET00002 mbilenky ENSMUSG00000022097 Sftpc ENSEMBL mus_musculus_core_41_36b 4233 POSITIVE OUTCOME 9407049 0 search_space EMPTY 0 false 0 sequence tgcaggggcaggtgccagcaagagaggcagacatgccagaaa 0 false 0 sequence_with_flank tgcaggggcaggtgccagcaagagaggcagacatgccagaaagacacccacggtgagaggagcaggtggcccgagggtgagtttgcttacctcacccaggtttgctcttgttggggccaagaggattcatgtgcctaggccaagggcccttgggggctcttgcagctgccttatcggggcctgggctctgaaaagccaggaacaaacaagctacaaagccaaggacttggctggcagacaggaggcccagtccttcacccctgtcctctctgtctctgatgatatatataagacactggtcacaccagagagatgaggagaggagagagagagagaaac 0 false Mus musculus OREG0002586 REGULATORY REGION Transcription factor here is nuclear-factor I family (ENSMUSG00000008575/ENSMUSG00000028565/ENSMUSG00000001911/ENSMUSG00000055053) 4 members 30-Nov-2006 mbilenky 30-Nov-2006 TGAAC results in 40-60% loss of promoter activity]]> 30-Nov-2006 OREGEC00001 OREGES00045 OREGET00002 mbilenky ENSMUSG00000022097 Sftpc ENSEMBL mus_musculus_core_41_36b 4239 POSITIVE OUTCOME 9407049 0 search_space EMPTY 0 false 0 sequence TGGCT 0 false 0 sequence_with_flank tgcaggggcaggtgccagcaagagaggcagacatgccagaaagacacccacggtgagaggagcaggtggcccgagggtgagtttgcttacctcacccaggtttgctcttgttggggccaagaggattcatgtgcctaggccaagggcccttgggggctcttgcagctgccttatcggggcctgggctctgaaaagccaggaacaaacaagctacaaagccaaggactTGGCTggcagacaggaggcccagtccttcacccctgtcctctctgtctctgatgatatatataagacactggtcacaccagagagatgaggagaggagagagagagagaaac 0 false Mus musculus OREG0002588 ENSMUSG00000008575 Nfib ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE reults are for 4 potential NFI TF (family) 30-Nov-2006 mbilenky 30-Nov-2006 23-Apr-2007 OREG0002986 bcb TAAAA results in 40-60% loss of promoter activity]]> 30-Nov-2006 OREGEC00001 OREGES00045 OREGET00002 mbilenky ENSMUSG00000022097 Sftpc ENSEMBL mus_musculus_core_41_36b 4241 POSITIVE OUTCOME 9407049 0 search_space EMPTY 0 false 0 sequence TGCCA 0 false 0 sequence_with_flank tgcaggggcaggtgccagcaagagaggcagacatgccagaaagacacccacggtgagaggagcaggtggcccgagggtgagtttgcttacctcacccaggtttgctcttgttggGGCCAagaggattcatgtgcctaggccaagggcccttgggggctcttgcagctgccttatcggggcctgggctctgaaaagccaggaacaaacaagctacaaagccaaggacttggctggcagacaggaggcccagtccttcacccctgtcctctctgtctctgatgatatatataagacactggtcacaccagagagatgaggagaggagagagagagagaaac 0 false Mus musculus OREG0002591 ENSMUSG00000008575 Nfib ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE NFI (note there 4 family members) ENSMUSG00000008575/ENSMUSG00000028565/ENSMUSG00000001911/ENSMUSG00000055053 30-Nov-2006 mbilenky 30-Nov-2006 GT (probe C4m2) interfered with NFI binding (large arrowhead) but not binding of the faster mobility protein-DNA complex (small arrowhead). The faster mobility complex of C4 and C4m2 with MLE-15 nuclear extracts was not affected by 200-fold molar excess of the palindromic NFI competitor oligonucleotide. In contrast, a 4-base pair mutation of sequences adjacent to the NFI binding site (GACA 3 TTGC, shown in Fig. 5A) resulted in loss of this complex (C4m1, Fig. 5B). These results indicate that NFI and another nuclear factor(s) bind to adjacent/overlapping sites in the C4 probe. ]]> 30-Nov-2006 OREGEC00001 OREGES00001 OREGET00001 mbilenky ENSMUSG00000022097 Sftpc ENSEMBL mus_musculus_core_41_36b 4247 POSITIVE OUTCOME 9407049 0 search_space EMPTY 0 false 0 sequence TGCCA 0 false 0 sequence_with_flank tgcaggggcaggtgccagcaagagaggcagacaTGCCAgaaagacacccacggtgagaggagcaggtggcccgagggtgagtttgcttacctcacccaggtttgctcttgttggggccaagaggattcatgtgcctaggccaagggcccttgggggctcttgcagctgccttatcggggcctgggctctgaaaagccaggaacaaacaagctacaaagccaaggacttggctggcagacaggaggcccagtccttcacccctgtcctctctgtctctgatgatatatataagacactggtcacaccagagagatgaggagaggagagagagagagaaac 0 false Mus musculus OREG0002600 ENSMUSG00000008575 Nfib ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE NFI (note there 4 family members) ENSMUSG00000008575/ENSMUSG00000028565/ENSMUSG00000001911/ENSMUSG00000055053 30-Nov-2006 mbilenky 30-Nov-2006 MLE-15 mouse cells Alignment of the C5 region probe (2318 to 2298) with the palindromic NFI consensus sequence revealed the presence of a potential strong NFI binding site (Fig. 6A). In a competition EMSA, the NFI consensus sequence competed for binding with the C5 probe, and mutation of the NFI binding site in C5m (GCC 3 TTT) resulted in loss of binding (Fig. 6B). Addition of antiserum to NFI produced supershifted EMSA complexes with C4, C4m1, and C5 (Fig. 6C), indicating that NFI family members interact with sites in both C4 and C5. The apparent abundance of the faster migrating C4 complex with MLE-15 nuclear protein(s) was increased in the presence of antibody to NFI, suggesting that binding of this complex and NFI may be mutually exclusive. 30-Nov-2006 OREGEC00001 OREGES00001 OREGET00001 mbilenky ENSMUSG00000022097 Sftpc ENSEMBL mus_musculus_core_41_36b 4248 POSITIVE OUTCOME 9407049 0 search_space EMPTY 0 false 0 sequence TGCCA 0 false 0 sequence_with_flank tgcaggggcaggTGCCAgcaagagaggcagacatgccagaaagacacccacggtgagaggagcaggtggcccgagggtgagtttgcttacctcacccaggtttgctcttgttggggccaagaggattcatgtgcctaggccaagggcccttgggggctcttgcagctgccttatcggggcctgggctctgaaaagccaggaacaaacaagctacaaagccaaggacttggctggcagacaggaggcccagtccttcacccctgtcctctctgtctctgatgatatatataagacactggtcacaccagagagatgaggagaggagagagagagagaaac 0 false Mus musculus OREG0002610 ENSMUSG00000008575 Nfib ENSEMBL mus_musculus_core_41_36b TRANSCRIPTION FACTOR BINDING SITE Homo sapiens 9606 Drosophila melanogaster 7227 Rattus norvegicus 10116 Mus musculus 10090 mbilenky Encode id - ENm003:stSG601807 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw APOA4/APOC3 APOA4/APOC3 USER DEFINED 2857 POSITIVE OUTCOME 9366246 0 search_space EMPTY 0 false 0 sequence TCAAACCAGGGGTCAGTCCAGAGGTCAGAGTCA 0 false 0 sequence_with_flank cattagctacagccacccctcctggccaaccacacagggaTCAAACCAGGGGTCAGTCCAGAGGTCAGAGTCAggagcagacaactcagatccagccagggacaggcaggtca 0 false Homo sapiens OREG0001802 3172 HNF4A NCBI TRANSCRIPTION FACTOR BINDING SITE Encode ID - ENm003:stSG601804 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 337 APOA4 NCBI 2858 POSITIVE OUTCOME 15583007 0 search_space EMPTY 0 false 0 sequence TAGTCTCAGGGTCACAAAAGTCCAAGAGGCC 0 false 0 sequence_with_flank taactatcgcctgagccctgatctgctgtcagcttccacgTAGTCTCAGGGTCACAAAAGTCCAAGAGGCCtcttgggaatgtgtcaccttccagcgtggagtcacactg 0 false Homo sapiens OREG0001803 3172 HNF4A NCBI TRANSCRIPTION FACTOR BINDING SITE Encode ID - ENm003:stSG601804 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 337 APOA4 NCBI 2859 POSITIVE OUTCOME 15583007 0 search_space EMPTY 0 false 0 sequence GGAGATGTGGACTTTGCCCCCCATGAGCCC 0 false 0 sequence_with_flank gtggagactggggggacctgtcttcactggggtagacagaGGAGATGTGGACTTTGCCCCCCATGAGCCCggcacaaacccagagccgccagcagggcctcgaggcatca 0 false Homo sapiens OREG0001804 3172 HNF4A NCBI TRANSCRIPTION FACTOR BINDING SITE Encode ID - ENm003:stSG601810 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 345 APOC3 NCBI 2860 POSITIVE OUTCOME 7984419 0 search_space EMPTY 0 false 0 sequence GGTCAGCAGGTGACCTTTGCCCAGCG 0 false 0 sequence_with_flank gctgcatctggacaccctgcctcaggccctcatctccactGGTCAGCAGGTGACCTTTGCCCAGCGccctgggtcctcagtgcctgctgccctggagatgatataa 0 false Homo sapiens OREG0001805 3172 HNF4A NCBI TRANSCRIPTION FACTOR BINDING SITE Encode ID - ENr132:stSG621988 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 2159 F10 NCBI 2861 POSITIVE OUTCOME 8567696 0 search_space EMPTY 0 false 0 sequence TCCCAGCTGGGGCGTGGACTTTGCTCCA 0 false 0 sequence_with_flank ggaggcctaagccaagtgataagcagccagacaacagccaTCCCAGCTGGGGCGTGGACTTTGCTCCAgcagcctgtcccagtgaggacagggacacagtactcggcc 0 false Homo sapiens OREG0001806 3172 HNF4A NCBI TRANSCRIPTION FACTOR BINDING SITE Encode ID - ENm003:stSG601817 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 335 APOA1 NCBI 2862 POSITIVE OUTCOME 8626539 0 search_space EMPTY 0 false 0 sequence CCGCCCCCACTGAACCCTTGACCCCTGCCCT 0 false 0 sequence_with_flank ccccacccgggagacctgcaagcctgcagacactcccctcCCGCCCCCACTGAACCCTTGACCCCTGCCCTgcagcccccgcagcttgctgtttgcccactctatttgcc 0 false Homo sapiens OREG0001807 3172 HNF4A NCBI TRANSCRIPTION FACTOR BINDING SITE Encode ID - ENm003:stSG601817 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 335 APOA1 NCBI 2863 POSITIVE OUTCOME 8626539 0 search_space EMPTY 0 false 0 sequence CCTTGAACTCTTAAGTTCCACATTGCCAGGACCAGTGAGCAGCAACAGGGCC 0 false 0 sequence_with_flank ttgcccactctatttgcccagccccagggacagagctgatCCTTGAACTCTTAAGTTCCACATTGCCAGGACCAGTGAGCAGCAACAGGGCCggggctgggcttatcagcctcccagcccagaccctggctg 0 false Homo sapiens OREG0001810 3172 HNF4A NCBI TRANSCRIPTION FACTOR BINDING SITE Encode ID - ENm003:stSG601817 16-Nov-2005 claesw 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 335 APOA1 NCBI 2864 POSITIVE OUTCOME 7961760 0 search_space EMPTY 0 false 0 sequence TGCCCACTCTATTTGCCCAGCCCCAG 0 false 0 sequence_with_flank acccttgacccctgccctgcagcccccgcagcttgctgttTGCCCACTCTATTTGCCCAGCCCCAGggacagagctgatccttgaactcttaagttccacattgcc 0 false Homo sapiens OREG0001811 3170 FOXA2 NCBI TRANSCRIPTION FACTOR BINDING SITE 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 345 APOC3 NCBI 2865 POSITIVE OUTCOME 11839757 0 search_space EMPTY 0 false 0 sequence GGTCAGCAGGTGACCTTTGCCCAGCG 0 false 0 sequence_with_flank gctgcatctggacaccctgcctcaggccctcatctccactGGTCAGCAGGTGACCTTTGCCCAGCGccctgggtcctcagtgcctgctgccctggagatgatata 0 false Homo sapiens OREG0001813 7391 USF1 NCBI TRANSCRIPTION FACTOR BINDING SITE 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 116519 APOA5 NCBI 2866 POSITIVE OUTCOME 15684402 0 search_space EMPTY 0 false 0 sequence CTTCCACGTGGTATTTA 0 false 0 sequence_with_flank ggaggtgagtgctgggaggcagctgaggtcaacttcttttgaaCTTCCACGTGGTATTTActcagagcaattggtgccagaggctcagggccctggagtataaagcagaa 0 false Homo sapiens OREG0001814 7391 USF1 NCBI TRANSCRIPTION FACTOR BINDING SITE 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 345 APOC3 NCBI 2867 POSITIVE OUTCOME 2161843 0 search_space EMPTY 0 false 0 sequence CTCAGTCTCCTAGGGATTTCCCAACTCTCCCGCCC 0 false 0 sequence_with_flank gctcatctgggctgcagggctggcgggacagcagcgtggaCTCAGTCTCCTAGGGATTTCCCAACTCTCCCGCCCgcttgctgcatctggacaccctgcctcaggccctcatctc 0 false Homo sapiens OREG0001815 1050 CEBPA NCBI TRANSCRIPTION FACTOR BINDING SITE 16-Nov-2005 16-Nov-2005 OREGEC00000 OREGES00000 OREGET00000 claesw 335 APOA1 NCBI 2868 POSITIVE OUTCOME 1900840 0 search_space EMPTY 0 false 0 sequence GCTTGCTGTTTGCCCACTCTATTTG 0 false 0 sequence_with_flank cccccactgaacccttgacccctgccctgcagcccccgcaGCTTGCTGTTTGCCCACTCTATTTGcccagccccagggacagagctgatccttgaactcttaagt 0 false Homo sapiens OREG0001816 1050 CEBPA NCBI TRANSCRIPTION FACTOR BINDING SITE Homo sapiens 9606 claesw 29-Nov-2006 DNAse1 footprinting is in reference 14: Roberts MR, Miskinins WK and Ruddle FH 1989, Cell Regul. 1:151-164 29-Nov-2006 OREGEC00000 OREGES00015 OREGET00003 agrobertson 29-Nov-2006 OREGEC00000 OREGES00003 OREGET00001 agrobertson ENSG00000072274 TFRC ENSEMBL homo_sapiens_core_41_36c 4131 POSITIVE OUTCOME 8022786 0 search_space EMPTY 0 false 0 sequence AAGTGACG 0 false 0 sequence_with_flank cgcgagcgtacgtgcctcaggAAGTGACGcacagcccccctgggggc 0 false Homo sapiens OREG0002488 ENSG00000079246 XRCC5 ENSEMBL homo_sapiens_core_41_36c TRANSCRIPTION FACTOR BINDING SITE 1 There is an NF-kB site TAAAATTCCCC about 20bp 5' of the C/EBP site. The two TF's act synergistically. 2 How the different C/EBP family members reacted in EMSA depended on whether cells were HKLM-activated or not. 30-Nov-2006 agrobertson 30-Nov-2006 EV:0200085 30-Nov-2006 OREGEC00000 OREGES00013 OREGET00001 agrobertson EV:0200085 30-Nov-2006 OREGEC00000 OREGES00015 OREGET00003 agrobertson ENSMUSG00000004296 Il12b ENSEMBL mus_musculus_core_41_36b 4215 POSITIVE OUTCOME 9234715 0 search_space EMPTY 0 false 0 sequence GTGTTGCAA 0 false 0 sequence_with_flank gacactagttttcaGTGTTGCAAttgagactagtcagttt 0 false Mus musculus OREG0002555 C/EBPalpha/beta/gamma C/EBPalpha/beta/gamma USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Homo sapiens 9606 Mus musculus 10090 agrobertson Bergman DNAse I footprint sites: www.flyreg.org: FPID:005039 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG32954 Adh ENSEMBL drosophila_melanogaster_core_27_3c 857 POSITIVE OUTCOME 2105454 0 search_space EMPTY 0 false 0 sequence GACATTCACAAGGTCAAAG 0 false 0 sequence_with_flank cacttctccttgctatgcttGACATTCACAAGGTCAAAGctcttaatattctggctcgt 0 false Drosophila melanogaster OREG0000619 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005038 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG32954 Adh ENSEMBL drosophila_melanogaster_core_27_3c 856 POSITIVE OUTCOME 2105454 0 search_space EMPTY 0 false 0 sequence GACCGCAGCAACAACACGATCTTT 0 false 0 sequence_with_flank ttaagccgaagttcaattgcGACCGCAGCAACAACACGATCTTTctacacttctccttgctatg 0 false Drosophila melanogaster OREG0000618 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005037 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG32954 Adh ENSEMBL drosophila_melanogaster_core_27_3c 855 POSITIVE OUTCOME 1547943 0 search_space EMPTY 0 false 0 sequence GACCGCAGCAACAACACGATCTTT 0 false 0 sequence_with_flank ttaagccgaagttcaattgcGACCGCAGCAACAACACGATCTTTctacacttctccttgctatg 0 false Drosophila melanogaster OREG0000617 Aef1 Aef1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005036 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG32954 Adh ENSEMBL drosophila_melanogaster_core_27_3c 854 POSITIVE OUTCOME 2105454 0 search_space EMPTY 0 false 0 sequence GTATTACACGTATGCAAATTAAGCCG 0 false 0 sequence_with_flank cccgttggctcccagtcacaGTATTACACGTATGCAAATTAAGCCGaagttcaattgcgaccgcag 0 false Drosophila melanogaster OREG0000616 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:004212 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG8827 Ance ENSEMBL drosophila_melanogaster_core_27_3c 853 POSITIVE OUTCOME 9053307 0 search_space EMPTY 0 false 0 sequence CGATCTCGCATTAAAAATAAATAATG 0 false 0 sequence_with_flank aacatcagacgcgactaagcCGATCTCGCATTAAAAATAAATAATGctcgagtttatcgaccattt 0 false Drosophila melanogaster OREG0000615 zen zen USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:004211 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG8827 Ance ENSEMBL drosophila_melanogaster_core_27_3c 852 POSITIVE OUTCOME 9053307 0 search_space EMPTY 0 false 0 sequence ATATTAATGATCTTCCA 0 false 0 sequence_with_flank tgtgaggaaatgtgtcaggcATATTAATGATCTTCCAaacatcggcttatcttcgcg 0 false Drosophila melanogaster OREG0000614 zen zen USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006019 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 850 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence TTCAGGGGCGTTACC 0 false 0 sequence_with_flank gaggtcattgcaagccgtttTTCAGGGGCGTTACCgaagtcgactctctgctgag 0 false Drosophila melanogaster OREG0000612 hkb hkb USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:004210 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG8827 Ance ENSEMBL drosophila_melanogaster_core_27_3c 851 POSITIVE OUTCOME 9053307 0 search_space EMPTY 0 false 0 sequence GAGATAAGTGCCCATTAGTT 0 false 0 sequence_with_flank tttttttctgtacccaaaggGAGATAAGTGCCCATTAGTTtattttcatcacaagtttta 0 false Drosophila melanogaster OREG0000613 zen zen USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006017 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 849 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence AAGCCGTTTTTCAGG 0 false 0 sequence_with_flank ctatttttcgaggtcattgcAAGCCGTTTTTCAGGggcgttaccgaagtcgactc 0 false Drosophila melanogaster OREG0000611 hb hb USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006018 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 848 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence AAGCCGTTTTTC 0 false 0 sequence_with_flank ctatttttcgaggtcattgcAAGCCGTTTTTCaggggcgttaccgaagtcga 0 false Drosophila melanogaster OREG0000610 bcd bcd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006016 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 847 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence TTAAGCAAAGGAGTGTCATAGAAATGGGTGAAATTCT 0 false 0 sequence_with_flank atccttttgcgtgggatcggTTAAGCAAAGGAGTGTCATAGAAATGGGTGAAATTCTgttcaaggctgttttgtata 0 false Drosophila melanogaster OREG0000609 Kr Kr USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006015 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 846 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence GAAATTTGTGCCATCCTTTT 0 false 0 sequence_with_flank atttttcaatatttgagcgtGAAATTTGTGCCATCCTTTTgcgtgggatcggttaagcaa 0 false Drosophila melanogaster OREG0000608 Kr Kr USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006014 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 845 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence CACCCATCATTTTTCAATATTTGAGCG 0 false 0 sequence_with_flank aagtgatatgcaaatattgaCACCCATCATTTTTCAATATTTGAGCGtgaaatttgtgccatccttt 0 false Drosophila melanogaster OREG0000607 cad cad USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006013 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 844 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence TCCGGCTTATCG 0 false 0 sequence_with_flank ccgtgggcgttgcattttccTCCGGCTTATCGaagatcgatcctcgctcctt 0 false Drosophila melanogaster OREG0000606 bcd bcd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006012 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 843 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence CCGTGGGCGTTGCAT 0 false 0 sequence_with_flank ttgttggccaaaggatttgtCCGTGGGCGTTGCATtttcctccggcttatcgaag 0 false Drosophila melanogaster OREG0000605 hkb hkb USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006011 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 842 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence AAAGGATTTGTCC 0 false 0 sequence_with_flank ccattacccttttgttggccAAAGGATTTGTCCgtgggcgttgcattttcctc 0 false Drosophila melanogaster OREG0000604 bcd bcd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006009 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 840 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence GGATTTGCA 0 false 0 sequence_with_flank ggatttgcatatggcgcgtcGGATTTGCAgccattacccttttgttggc 0 false Drosophila melanogaster OREG0000602 bcd bcd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006010 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 841 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence CAGCCATTACCCTTTTGTTGGCCAAAGGATTTGT 0 false 0 sequence_with_flank catatggcgcgtcggatttgCAGCCATTACCCTTTTGTTGGCCAAAGGATTTGTccgtgggcgttgcattttcc 0 false Drosophila melanogaster OREG0000603 Kr Kr USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006008 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 839 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence GGATTTGCA 0 false 0 sequence_with_flank agagcaccggaatcgtgggcGGATTTGCAtatggcgcgtcggatttgca 0 false Drosophila melanogaster OREG0000601 bcd bcd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006007 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 838 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence AATTAAGCATGGC 0 false 0 sequence_with_flank aggcaaatattttgcgtactAATTAAGCATGGCtcaagagcaccggaatcgtg 0 false Drosophila melanogaster OREG0000600 bcd bcd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006006 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 837 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence GTACTAATTA 0 false 0 sequence_with_flank aattaaggcaaatattttgcGTACTAATTAagcatggctcaagagcaccg 0 false Drosophila melanogaster OREG0000599 cad cad USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006005 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 836 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence CTTTGCGACAATTAAG 0 false 0 sequence_with_flank tccttctcgtttcccgcttgCTTTGCGACAATTAAGgcaaatattttgcgtactaa 0 false Drosophila melanogaster OREG0000598 cad cad USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006004 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 835 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence ATTATAAT 0 false 0 sequence_with_flank cggaaaatccgatcgaagggATTATAATtccagccaggcagcagccct 0 false Drosophila melanogaster OREG0000597 cad cad USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006003 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 834 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence CGAAGGGATTATA 0 false 0 sequence_with_flank agctgaccggaaaatccgatCGAAGGGATTATAattccagccaggcagcagcc 0 false Drosophila melanogaster OREG0000596 bcd bcd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006002 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 833 POSITIVE OUTCOME 9376314 0 search_space EMPTY 0 false 0 sequence TCGAAGGGATTAT 0 false 0 sequence_with_flank gagctgaccggaaaatccgaTCGAAGGGATTATaattccagccaggcagcagc 0 false Drosophila melanogaster OREG0000595 Kr Kr USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006348 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 832 POSITIVE OUTCOME 12070087 0 search_space EMPTY 0 false 0 sequence GGAGCATTATAAAAGTTTAATTGATT 0 false 0 sequence_with_flank atggcaaatattttccatgcGGAGCATTATAAAAGTTTAATTGATTgatttatacgtggggagttg 0 false Drosophila melanogaster OREG0000594 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006347 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 831 POSITIVE OUTCOME 12070087 0 search_space EMPTY 0 false 0 sequence ATAATATTAATTAT 0 false 0 sequence_with_flank ttggttttgcctttgtttaaATAATATTAATTATtttatttaaatgaaatctca 0 false Drosophila melanogaster OREG0000593 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006346 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 830 POSITIVE OUTCOME 12070087 0 search_space EMPTY 0 false 0 sequence TTTTAATTACCAAC 0 false 0 sequence_with_flank ctccaatatattagctgaaaTTTTAATTACCAACtgcgacttgaagcggactca 0 false Drosophila melanogaster OREG0000592 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006344 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 829 POSITIVE OUTCOME 11303087 0 search_space EMPTY 0 false 0 sequence ATGGACATTCGTGGGATTCCAGAA 0 false 0 sequence_with_flank atgatttttgtccccatccaATGGACATTCGTGGGATTCCAGAAagcatctttttaagttgtca 0 false Drosophila melanogaster OREG0000591 sd sd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006345 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 828 POSITIVE OUTCOME 11303087 0 search_space EMPTY 0 false 0 sequence ATGGACATTCGTGGGATTCCAGAA 0 false 0 sequence_with_flank atgatttttgtccccatccaATGGACATTCGTGGGATTCCAGAAagcatctttttaagttgtca 0 false Drosophila melanogaster OREG0000590 sd sd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006343 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 827 POSITIVE OUTCOME 12070087 0 search_space EMPTY 0 false 0 sequence TTTTATAATGTGCCCGTCTTAATATGAT 0 false 0 sequence_with_flank ggttaggcatgctcgatgtcTTTTATAATGTGCCCGTCTTAATATGATttttgtccccatccaatgga 0 false Drosophila melanogaster OREG0000589 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006342 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 826 POSITIVE OUTCOME 11303087 0 search_space EMPTY 0 false 0 sequence TATGCGA 0 false 0 sequence_with_flank gctactgctttttaataagtTATGCGAactgatggtttggttaggca 0 false Drosophila melanogaster OREG0000588 sd sd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006341 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG6464 salm ENSEMBL drosophila_melanogaster_core_27_3c 825 POSITIVE OUTCOME 12070087 0 search_space EMPTY 0 false 0 sequence CTTTTTAATAAGTT 0 false 0 sequence_with_flank tgtgctccccgatgctactgCTTTTTAATAAGTTatgcgaactgatggtttggt 0 false Drosophila melanogaster OREG0000587 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006340 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG11924 Cf2-II ENSEMBL drosophila_melanogaster_core_27_3c 824 POSITIVE OUTCOME 1411512 0 search_space EMPTY 0 false 0 sequence AGTATAATATAA 0 false 0 sequence_with_flank tttctaagtatgcaaattaaAGTATAATATAActttaacttaacgttataaa 0 false Drosophila melanogaster OREG0000586 Cf2-II Cf2-II USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000608 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 823 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence CTTCGTTTGATCCCAAAGGAT 0 false 0 sequence_with_flank gcaaagtagagtcggcgagaCTTCGTTTGATCCCAAAGGATgtttgtccatgtgagttgca 0 false Drosophila melanogaster OREG0000585 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000607 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 822 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence AAGTCCGGACTTCAAAGTCCATTTCG 0 false 0 sequence_with_flank ccaacccactcgcaaacgaaAAGTCCGGACTTCAAAGTCCATTTCGgtagcaaagtagagtcggcg 0 false Drosophila melanogaster OREG0000584 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000606 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 821 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence ACACTATGGACACAAAAA 0 false 0 sequence_with_flank acatgccataaaaacataaaACACTATGGACACAAAAAccacttgtacattcgtgttt 0 false Drosophila melanogaster OREG0000583 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000605 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 820 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence CAATTGTTCTAACAAAACATGCC 0 false 0 sequence_with_flank tatctgcctgtatatttgttCAATTGTTCTAACAAAACATGCCataaaaacataaaacactat 0 false Drosophila melanogaster OREG0000582 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000604 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 819 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence TGTCTAAGATATCAAACGCACAGTGC 0 false 0 sequence_with_flank ctttgattgttttgtcaagtTGTCTAAGATATCAAACGCACAGTGCcgccgacaagtattcgcccc 0 false Drosophila melanogaster OREG0000581 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000603 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 818 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence TTGTTGCTGCTTTGATTGTTTTGTC 0 false 0 sequence_with_flank acagtcatttggaacatgtgTTGTTGCTGCTTTGATTGTTTTGTCaagttgtctaagatatcaaa 0 false Drosophila melanogaster OREG0000580 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000602 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 817 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence AATTAGTTTTGTCGCGGTTGTCA 0 false 0 sequence_with_flank gattagggatttcacaaatcAATTAGTTTTGTCGCGGTTGTCAaaattatgcactcgccaggg 0 false Drosophila melanogaster OREG0000579 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000601 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 816 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence TATAATTGTCTTCATCTTTT 0 false 0 sequence_with_flank taaatatcttcatctgttttTATAATTGTCTTCATCTTTTcatatttttttatgcctaaa 0 false Drosophila melanogaster OREG0000578 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000600 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG16738 slp1 ENSEMBL drosophila_melanogaster_core_27_3c 815 POSITIVE OUTCOME 11076769 0 search_space EMPTY 0 false 0 sequence ATATATAATTTTCAAAGGTCTTACGA 0 false 0 sequence_with_flank aaacgaaaagtcaggaagggATATATAATTTTCAAAGGTCTTACGAccagaaactataacatagat 0 false Drosophila melanogaster OREG0000577 pan pan USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006411 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 813 POSITIVE OUTCOME 7713429 0 search_space EMPTY 0 false 0 sequence TTAATTGA 0 false 0 sequence_with_flank ttaattactagtgatggaaaTTAATTGAtcgattaattattgtattcc 0 false Drosophila melanogaster OREG0000575 en en USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006412 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 814 POSITIVE OUTCOME 7713429 0 search_space EMPTY 0 false 0 sequence GATTAATTAT 0 false 0 sequence_with_flank gtgatggaaattaattgatcGATTAATTATtgtattccagcattcaacaa 0 false Drosophila melanogaster OREG0000576 en en USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006410 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 812 POSITIVE OUTCOME 7713429 0 search_space EMPTY 0 false 0 sequence TTAATTAC 0 false 0 sequence_with_flank gttatctaagaatatttatgTTAATTACtagtgatggaaattaattga 0 false Drosophila melanogaster OREG0000574 en en USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006409 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 811 POSITIVE OUTCOME 7713429 0 search_space EMPTY 0 false 0 sequence TATAATTG 0 false 0 sequence_with_flank gcaggcagcgctaatttgaaTATAATTGtaaggaaacatgaaaatata 0 false Drosophila melanogaster OREG0000573 en en USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:006408 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 810 POSITIVE OUTCOME 7713429 0 search_space EMPTY 0 false 0 sequence GCGCTAATT 0 false 0 sequence_with_flank tgagggcgagtgggcaggcaGCGCTAATTtgaatataattgtaaggaaa 0 false Drosophila melanogaster OREG0000572 en en USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005251 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 809 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence CCCCGATTTCCCTG 0 false 0 sequence_with_flank tttcgacctacctttgtcgtCCCCGATTTCCCTGcactttccacgctctagagt 0 false Drosophila melanogaster OREG0000571 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005250 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 808 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence CTCCGGTTGATTCCCGCT 0 false 0 sequence_with_flank ttcggactcggaacccaaccCTCCGGTTGATTCCCGCTtcccaaaagaatttacgact 0 false Drosophila melanogaster OREG0000570 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005249 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 807 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence CTCGGAACCCAAC 0 false 0 sequence_with_flank gttggtttctggttttcggaCTCGGAACCCAACcctccggttgattcccgctt 0 false Drosophila melanogaster OREG0000569 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005248 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 806 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence TATAGGGTCGAACAATAAAG 0 false 0 sequence_with_flank cgcattattttccgcaggatTATAGGGTCGAACAATAAAGcagttaggtgcaggtaagca 0 false Drosophila melanogaster OREG0000568 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005247 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 805 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence TTTCGCATTATTTTCCG 0 false 0 sequence_with_flank acaattattattaaagcgtaTTTCGCATTATTTTCCGcaggattatagggtcgaaca 0 false Drosophila melanogaster OREG0000567 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005246 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 804 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence AAATGGCTTTTATATTGTATTTGTAGGAATAACAATTATTATTAAA 0 false 0 sequence_with_flank gaccgtttagcgcatgcgctAAATGGCTTTTATATTGTATTTGTAGGAATAACAATTATTATTAAAgcgtatttcgcattattttc 0 false Drosophila melanogaster OREG0000566 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005244 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 802 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence TGAAATTTTTCCTAAGA 0 false 0 sequence_with_flank cgacagctcggcagtgacctTGAAATTTTTCCTAAGAattacaccaggaccgtttag 0 false Drosophila melanogaster OREG0000564 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005245 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 803 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence AAATGGCTTTTATATT 0 false 0 sequence_with_flank gaccgtttagcgcatgcgctAAATGGCTTTTATATTgtatttgtaggaataacaat 0 false Drosophila melanogaster OREG0000565 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005243 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 801 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence GACCTTGAAATTTTTCCT 0 false 0 sequence_with_flank cgcgacgacagctcggcagtGACCTTGAAATTTTTCCTaagaattacaccaggaccgt 0 false Drosophila melanogaster OREG0000563 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005242 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 800 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence TCCGCGACGACAGC 0 false 0 sequence_with_flank agagtccttttacctgctctTCCGCGACGACAGCtcggcagtgaccttgaaatt 0 false Drosophila melanogaster OREG0000562 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005241 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 799 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence TACCTGC 0 false 0 sequence_with_flank aaaggacacgagagtcctttTACCTGCtcttccgcgacgacagctcg 0 false Drosophila melanogaster OREG0000561 grh grh USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005240 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 798 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence CTAAAAGGACACGAGAGTCCTTTTACCTGCTC 0 false 0 sequence_with_flank cggctttccaaaatgaacagCTAAAAGGACACGAGAGTCCTTTTACCTGCTCttccgcgacgacagctcggc 0 false Drosophila melanogaster OREG0000560 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005239 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 797 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence CACGCGGAAATTCCACGG 0 false 0 sequence_with_flank tcacgcaagcgctgtgaaatCACGCGGAAATTCCACGGctttccaaaatgaacagcta 0 false Drosophila melanogaster OREG0000559 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005238 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 796 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence AGTCGGATTTTCCTGAAATTTCTGTTTCATCTAAGCGATTTGCATACCTGCCGAT 0 false 0 sequence_with_flank caaaatgcgaatgaagagccAGTCGGATTTTCCTGAAATTTCTGTTTCATCTAAGCGATTTGCATACCTGCCGATccctagatccttctgtcctc 0 false Drosophila melanogaster OREG0000558 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005237 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 795 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence AGTCGGATTTTCCTGA 0 false 0 sequence_with_flank caaaatgcgaatgaagagccAGTCGGATTTTCCTGAaatttctgtttcatctaagc 0 false Drosophila melanogaster OREG0000557 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005236 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 794 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence TACCAAAAT 0 false 0 sequence_with_flank tcgcaatgcgtactttccgcTACCAAAATgcgaatgaagagccagtcgg 0 false Drosophila melanogaster OREG0000556 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005235 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 793 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence AATGCGTACTTTCCGCTACC 0 false 0 sequence_with_flank tttatattcccactcatcgcAATGCGTACTTTCCGCTACCaaaatgcgaatgaagagcca 0 false Drosophila melanogaster OREG0000555 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005234 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 792 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence TTTATATTCCCACT 0 false 0 sequence_with_flank tcgatgtgtattagccgtaaTTTATATTCCCACTcatcgcaatgcgtactttcc 0 false Drosophila melanogaster OREG0000554 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005233 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 791 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence TAATTTATATT 0 false 0 sequence_with_flank gcttcgatgtgtattagccgTAATTTATATTcccactcatcgcaatgcgta 0 false Drosophila melanogaster OREG0000553 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005232 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 790 POSITIVE OUTCOME 8543160 0 search_space EMPTY 0 false 0 sequence CACCTGCC 0 false 0 sequence_with_flank cttcctatacctgaattttcCACCTGCCatccgcctaggcttttgtgc 0 false Drosophila melanogaster OREG0000552 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005231 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 789 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence TACCTGAATTTTCCACCT 0 false 0 sequence_with_flank ccattttcaattacttcctaTACCTGAATTTTCCACCTgccatccgcctaggcttttg 0 false Drosophila melanogaster OREG0000551 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005230 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 788 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence TCTGGTTTATCTAGA 0 false 0 sequence_with_flank tccatttttattgatttcaaTCTGGTTTATCTAGAtcgcatggtacatcttaggt 0 false Drosophila melanogaster OREG0000550 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:005229 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 787 POSITIVE OUTCOME 8458580 0 search_space EMPTY 0 false 0 sequence AAGAATAATTTCCATTT 0 false 0 sequence_with_flank atatatttgctttttataagAAGAATAATTTCCATTTttattgatttcaatctggtt 0 false Drosophila melanogaster OREG0000549 dl dl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003668 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 786 POSITIVE OUTCOME 7791801 0 search_space EMPTY 0 false 0 sequence GAAGAGCA 0 false 0 sequence_with_flank gtcgcttacctgccgaagaaGAAGAGCAgcgttcagtcgcgcagcgca 0 false Drosophila melanogaster OREG0000548 Trl Trl USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003667 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 785 POSITIVE OUTCOME 7791801 0 search_space EMPTY 0 false 0 sequence TGCCGAAGAAGAAGAGCA 0 false 0 sequence_with_flank cgctgcagacgtcgcttaccTGCCGAAGAAGAAGAGCAgcgttcagtcgcgcagcgca 0 false Drosophila melanogaster OREG0000547 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003665 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 784 POSITIVE OUTCOME 7791801 0 search_space EMPTY 0 false 0 sequence GCCGCGGTCGCAGCGCTGCCGCTGCCGC 0 false 0 sequence_with_flank caaaaggaggcgacgtcgctGCCGCGGTCGCAGCGCTGCCGCTGCCGCagctaccgccgctgcagacg 0 false Drosophila melanogaster OREG0000546 Adf1 Adf1 USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003666 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 783 POSITIVE OUTCOME 7791801 0 search_space EMPTY 0 false 0 sequence GCCGCGGTCGCAGCGCTGCCGCTGCCGC 0 false 0 sequence_with_flank caaaaggaggcgacgtcgctGCCGCGGTCGCAGCGCTGCCGCTGCCGCagctaccgccgctgcagacg 0 false Drosophila melanogaster OREG0000545 Unspecified Unspecified USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:000448 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 782 POSITIVE OUTCOME 1673656 0 search_space EMPTY 0 false 0 sequence CCATTACCATTACCATTATCATTACCGTTACTATTACCATTA 0 false 0 sequence_with_flank attgttttccttcacctctaCCATTACCATTACCATTATCATTACCGTTACTATTACCATTAccaaccgggcgatccatcca 0 false Drosophila melanogaster OREG0000544 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:002912 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 781 POSITIVE OUTCOME 3145199 0 search_space EMPTY 0 false 0 sequence CACTCA 0 false 0 sequence_with_flank agtgtgtgtgtgtggtcggcCACTCAagagagcggcgaaaaaacga 0 false Drosophila melanogaster OREG0000543 z z USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:002911 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 780 POSITIVE OUTCOME 3145199 0 search_space EMPTY 0 false 0 sequence TGAGTG 0 false 0 sequence_with_flank acatcgaccaattaactggtTGAGTGtgtgtgtgtggtcggccact 0 false Drosophila melanogaster OREG0000542 z z USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:002910 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 779 POSITIVE OUTCOME 3145199 0 search_space EMPTY 0 false 0 sequence CACTCA 0 false 0 sequence_with_flank tctctggtgagaaaaaaaacCACTCAaaaccccagagaacatcgac 0 false Drosophila melanogaster OREG0000541 z z USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003664 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 778 POSITIVE OUTCOME 7859741 0 search_space EMPTY 0 false 0 sequence TTTATCGAT 0 false 0 sequence_with_flank agttatggtggccattaagtTTTATCGATggcgctacagctcccgatcc 0 false Drosophila melanogaster OREG0000540 exd exd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003662 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 777 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence GGCCATTAA 0 false 0 sequence_with_flank ttcggctcaacagttatggtGGCCATTAAgttttatcgatggcgctaca 0 false Drosophila melanogaster OREG0000539 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003663 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 776 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence GGCCATTAA 0 false 0 sequence_with_flank ttcggctcaacagttatggtGGCCATTAAgttttatcgatggcgctaca 0 false Drosophila melanogaster OREG0000538 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003660 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 775 POSITIVE OUTCOME 7821226 0 search_space EMPTY 0 false 0 sequence AATTTG 0 false 0 sequence_with_flank taaatttgaatgcgcgctgcAATTTGccgccattcggctcaacagt 0 false Drosophila melanogaster OREG0000537 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003661 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 774 POSITIVE OUTCOME 7821226 0 search_space EMPTY 0 false 0 sequence AATTTG 0 false 0 sequence_with_flank taaatttgaatgcgcgctgcAATTTGccgccattcggctcaacagt 0 false Drosophila melanogaster OREG0000536 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003658 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 773 POSITIVE OUTCOME 7821226 0 search_space EMPTY 0 false 0 sequence TGCGCG 0 false 0 sequence_with_flank caattagtaataaatttgaaTGCGCGctgcaatttgccgccattcg 0 false Drosophila melanogaster OREG0000535 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003659 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 772 POSITIVE OUTCOME 7821226 0 search_space EMPTY 0 false 0 sequence TGCGCG 0 false 0 sequence_with_flank caattagtaataaatttgaaTGCGCGctgcaatttgccgccattcg 0 false Drosophila melanogaster OREG0000534 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003657 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 771 POSITIVE OUTCOME 7859741 0 search_space EMPTY 0 false 0 sequence AGTAATAAA 0 false 0 sequence_with_flank cctgcaattcacacccaattAGTAATAAAtttgaatgcgcgctgcaatt 0 false Drosophila melanogaster OREG0000533 exd exd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003655 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 770 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence CCCAATTAGTAATAAAT 0 false 0 sequence_with_flank tgcactgcctgcaattcacaCCCAATTAGTAATAAATttgaatgcgcgctgcaattt 0 false Drosophila melanogaster OREG0000532 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003656 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 769 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence CCCAATTAGTAATAAAT 0 false 0 sequence_with_flank tgcactgcctgcaattcacaCCCAATTAGTAATAAATttgaatgcgcgctgcaattt 0 false Drosophila melanogaster OREG0000531 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003652 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 768 POSITIVE OUTCOME 7859741 0 search_space EMPTY 0 false 0 sequence ATCAATTAG 0 false 0 sequence_with_flank gagccgcagatcaaaggcctATCAATTAGcacccatttcgattatgctg 0 false Drosophila melanogaster OREG0000530 exd exd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003653 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 767 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence ATCAATTAG 0 false 0 sequence_with_flank gagccgcagatcaaaggcctATCAATTAGcacccatttcgattatgctg 0 false Drosophila melanogaster OREG0000529 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003654 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 766 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence ATCAATTAG 0 false 0 sequence_with_flank gagccgcagatcaaaggcctATCAATTAGcacccatttcgattatgctg 0 false Drosophila melanogaster OREG0000528 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003651 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 765 POSITIVE OUTCOME 11691840 0 search_space EMPTY 0 false 0 sequence AATCGCTGTAAATAAATAGGAGCCG 0 false 0 sequence_with_flank tgcacgatccgttgttttacAATCGCTGTAAATAAATAGGAGCCGcagatcaaaggcctatcaat 0 false Drosophila melanogaster OREG0000527 bin bin USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003649 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 764 POSITIVE OUTCOME 7821226 0 search_space EMPTY 0 false 0 sequence GATCC 0 false 0 sequence_with_flank gcaatgtttgttttatgcacGATCCgttgttttacaatcgctgta 0 false Drosophila melanogaster OREG0000526 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003650 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 763 POSITIVE OUTCOME 7821226 0 search_space EMPTY 0 false 0 sequence GATCC 0 false 0 sequence_with_flank gcaatgtttgttttatgcacGATCCgttgttttacaatcgctgta 0 false Drosophila melanogaster OREG0000525 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003648 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 762 POSITIVE OUTCOME 7915199 0 search_space EMPTY 0 false 0 sequence TTTGTTTTAT 0 false 0 sequence_with_flank gcccatttggccgtgcaatgTTTGTTTTATgcacgatccgttgttttaca 0 false Drosophila melanogaster OREG0000524 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003647 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 761 POSITIVE OUTCOME 7915199 0 search_space EMPTY 0 false 0 sequence TGTTTGTTTTA 0 false 0 sequence_with_flank atgcccatttggccgtgcaaTGTTTGTTTTAtgcacgatccgttgttttac 0 false Drosophila melanogaster OREG0000523 exd exd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003646 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 760 POSITIVE OUTCOME 7915199 0 search_space EMPTY 0 false 0 sequence CCCCATGCCCATTT 0 false 0 sequence_with_flank ttggcttcccatttcgatttCCCCATGCCCATTTggccgtgcaatgtttgtttt 0 false Drosophila melanogaster OREG0000522 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003645 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 759 POSITIVE OUTCOME 7915199 0 search_space EMPTY 0 false 0 sequence ATTTCGATTTC 0 false 0 sequence_with_flank tactacccatttggcttcccATTTCGATTTCcccatgcccatttggccgtg 0 false Drosophila melanogaster OREG0000521 exd exd USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003644 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 758 POSITIVE OUTCOME 7915199 0 search_space EMPTY 0 false 0 sequence CCATTTCG 0 false 0 sequence_with_flank agtactacccatttggcttcCCATTTCGatttccccatgcccatttgg 0 false Drosophila melanogaster OREG0000520 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003643 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 757 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence CCCATTTGGCTTCCCATTTCGA 0 false 0 sequence_with_flank ggcgattacgtggagtactaCCCATTTGGCTTCCCATTTCGAtttccccatgcccatttggc 0 false Drosophila melanogaster OREG0000519 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003642 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 756 POSITIVE OUTCOME 7915199 0 search_space EMPTY 0 false 0 sequence GTACTACCCATTTGGC 0 false 0 sequence_with_flank agacccggcgattacgtggaGTACTACCCATTTGGCttcccatttcgatttcccca 0 false Drosophila melanogaster OREG0000518 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003641 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 755 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence CTAATGATG 0 false 0 sequence_with_flank ccaactccagagcgccggtgCTAATGATGattttgatgtgcagtcaacg 0 false Drosophila melanogaster OREG0000517 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003639 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 754 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence GTAATGCGACCATTAC 0 false 0 sequence_with_flank cttccgttggccacttgacaGTAATGCGACCATTACggcaatgtgtcgaagaagaa 0 false Drosophila melanogaster OREG0000516 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003640 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 753 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence GTAATGCGACCATTAC 0 false 0 sequence_with_flank cttccgttggccacttgacaGTAATGCGACCATTACggcaatgtgtcgaagaagaa 0 false Drosophila melanogaster OREG0000515 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003637 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 752 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence TGATGTCTCC 0 false 0 sequence_with_flank atttatgaaatcataaaattTGATGTCTCCcttccgttggccacttgaca 0 false Drosophila melanogaster OREG0000514 abd-A abd-A USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003638 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 751 POSITIVE OUTCOME 7906203 0 search_space EMPTY 0 false 0 sequence TGATGTCTCC 0 false 0 sequence_with_flank atttatgaaatcataaaattTGATGTCTCCcttccgttggccacttgaca 0 false Drosophila melanogaster OREG0000513 Ubx Ubx USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003636 16-Aug-2005 erinp OREGDS00000 16-Aug-2005 16-Aug-2005 OREGEC00001 OREGES00015 OREGET00003 erinp CG9885 dpp ENSEMBL drosophila_melanogaster_core_27_3c 750 POSITIVE OUTCOME 11691840 0 search_space EMPTY 0 false 0 sequence TGAATCGCTGGTTAAATATTTAT 0 false 0 sequence_with_flank gttgtggaaatgcccgagatTGAATCGCTGGTTAAATATTTATgaaatcataaaatttgatgt 0 false Drosophila melanogaster OREG0000512 bin bin USER DEFINED TRANSCRIPTION FACTOR BINDING SITE Bergman DNAse I footprint sites: www.flyreg.org: FPID:003635 16-Aug-2005 erinp OREGDS00000 16-Aug-2005