You are not logged in
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 |
ORegAnno Citation
CITATION
Griffith O.L.*, Montgomery S.B.*, Bernier B., Chu B., Kasaian K., Aerts S., Mahony S., Sleumer M.C., Bilenky M., Haeussler M., Griffith M., Gallo S.M., Giardine B., Hooghe B., Van Loo P., Blanco E., Ticoll A., Lithwick S., Portales-Casamar E., Donaldson I.J., Robertson A.G., Wadelius C., De Bleser P., Vlieghe D., Halfon M.S., Wasserman W.W., Hardison R., Bergman C.M., Jones S.J.M. and the Open Regulatory Annotation Consortium "ORegAnno: an open-access community-driven resource for regulatory annotation", Nucleic Acids Research, January 2008. *These authors contributed equally to this work.
Montgomery S.B.*, Griffith O.L.*, Sleumer M.C., Bergman C.M., Bilenky M., Pleasance E.D., Prychyna Y., Zhang X., Jones S.J.M. "ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation", Bioinformatics, March 2006. *These authors contributed equally to this work.
In cases where ORegAnno acts as a proxy to datasets originally stored in other collections (listed below or from individual records), these authors should be explicitly cited (either in conjunction with or in lieu of ORegAnno). Our web services will soon provide this information with returned results as to appropriate citation information for incorporated datasets within ORegAnno.
ACKNOWLEDGEMENTS
This project was funded by Genome Canada, the Michael Smith Foundation for Health Research, the Natural Sciences and Engineering Research Council, and the Canadian Insititute for Health Research. It will received ongoing maintenance and support from 2005 through 2007. Data collaborations are being actively pursued; a list of currently integrated datasets is listed below.
USER LIST
MAJOR CONTRIBUTORS
Resource |
Contribution and notes |
Reference |
URL |
|---|---|---|---|
REDfly database, Buffalo University, U.S.A. |
CRMs annotated from literature for Drosophila melanogaster |
||
Claes Wadelius, Department of Genetics & Pathology, Uppsala University, Sweden |
Records were contributed for HNF-3beta, HNF-4alpha, USF1 and C/EBP sites |
N/A |
|
Stanford ENCODE Promoter Set |
Promoters identified in multiple cell lines from Rick Myer's group at Stanford. This set includes more cell lines than in the original publication. |
||
1330 Drosophila DNase I footprint sites. The complete data set was obtained from www.flyreg.org. Every record in ORegAnno from this resource includes the url and FPID as a comment. |
|||
Wasserman, Fickett et al. Muscle/Liver set |
A large number of sites were obtained from a muscle/liver-specific set. |
||
A number of rSNP_guide rSNP records were included after manual verification against literature. Currently, only those reported as natural variation are included. |
|||
Efimenko et al (2005) Analysis of xbx genes in C. elegans |
A total of 8 sites were obtained from a list curated by Efimenko et al (2005) |
N/A |
|
Questions or comments to oreganno@bcgsc.ca. (Archived here)
 |
 |
